Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22330 307 / 2e-100 CYP79B3 "cytochrome P450, family 79, subfamily B, polypeptide 3", cytochrome P450, family 79, subfamily B, polypeptide 3 (.1) AT4G39950 301 / 2e-98 CYP79B2 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) AT5G05260 278 / 2e-89 CYP79A2 cytochrome p450 79a2 (.1) AT5G35917 273 / 5e-88 CYP79A3P "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) AT1G58260 206 / 2e-61 CYP79C3P, CYP79C2 cytochrome p450 79c2 (.1) AT1G16410 198 / 1e-59 SPS1, BUS1, CYP79F1 SUPERSHOOT 1, BUSHY 1, cytochrome p450 79f1 (.1.2) AT1G79370 194 / 3e-57 CYP79C1 "cytochrome P450, family 79, subfamily C, polypeptide 1", cytochrome P450, family 79, subfamily C, polypeptide 1 (.1) AT1G16400 179 / 2e-51 CYP79F2 "cytochrome P450, family 79, subfamily F, polypeptide 2", cytochrome P450, family 79, subfamily F, polypeptide 2 (.1) AT1G01280 112 / 4e-27 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT5G67310 87 / 1e-18 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023144 [exp] 592 / 0 AT4G39950 604 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10023143 [exp] 491 / 2e-172 AT4G39950 605 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10026341 [exp] 412 / 6e-142 AT4G39950 563 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031726 [exp] 408 / 6e-140 AT4G39950 573 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031145 [exp] 401 / 2e-137 AT4G39950 561 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031151 [exp] 401 / 4e-137 AT4G39950 603 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10031727 [exp] 288 / 5e-95 AT5G35917 216 / 2e-65 "cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene", cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene (.1) Lus10023142 [exp] 122 / 4e-32 AT4G39950 345 / 4e-116 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Lus10012624 [exp] 108 / 7e-26 AT1G01280 769 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G055200 [exp] 317 / 3e-104 AT4G39950 590 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157400 [exp] 308 / 5e-101 AT4G39950 556 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.013G157200 [exp] 307 / 1e-100 AT4G39950 580 / 0.0 "cytochrome P450, family 79, subfamily B, polypeptide 2", cytochrome P450, family 79, subfamily B, polypeptide 2 (.1) Potri.002G171800 [exp] 118 / 3e-29 AT1G01280 778 / 0.0 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) Potri.014G037500 [exp] 103 / 3e-24 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.002G121300 [exp] 100 / 3e-23 AT4G37370 308 / 2e-101 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020600 [exp] 96 / 9e-22 AT4G37370 479 / 4e-166 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G020500 [exp] 95 / 3e-21 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.014G037600 [exp] 94 / 6e-21 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.005G144000 [exp] 94 / 8e-21 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10000239 pacid=23158775 polypeptide=Lus10000239 locus=Lus10000239.g ID=Lus10000239.BGIv1.0 annot-version=v1.0 ATGGCCATGAACACCTCCGACCGCGGTCTATCCACCACCGCCACATCGTCACCATTCACCGCTGCTGTCACTACCACGACACCCACCGCCTTCATTGCCC TCCTCTTCGCCCTTCTCGTCTCCATCATAAGCTATGTCAACCTCAAGAAACGATCCTCGAAGGCGAAATTTGTTGCCAACGCATCAGAAGGAGCAGGTAG CATTGTGACTGGCAAAAATATTAAGCCGGTGCTCCCTCCGAGCCCACCTTCGTGGCCAGTGGTCGGGAACATTCCCGAGCTCTTCACCAAAAAGCCGGTG TTCCGGTGGGTGCACAACCTGATGAAGGAGATGAACACAGACATCTGCCTGATCCGTCTGGGCGGGTTCAACATCATACCGGTGCTGGATCCGGCCATTG CGAGGGAGATGTTCAAGAAGCAAGACGCCATCTTTGTGGACCGCCCTCACACGGTGGGGAGTCACGCCATGGGCGGTGGCTACACGGCGACGATCGGGAC ACCCTACGGCGACCAGTGGCGCAAGATGAGGAAAGTGATCACGTCCGAGATCGTCTCCCCGGCCAGACACAAGTGGCTCCACCAGAAGCGCGCCGAGGAG GCCGACAACCTTGTGTTCTACGTCCACAATCTCTGCATGGCCGGAAAGAGTGTCGACTTGAGGCTGACCACCCAGCATTACTGCGGGAACGTGATAAGGA AGATGATGTTCAGCAAGAGGTTCTTCGGGGAGCCCACCGCGGACGGTGGGCCCGGCGCGAAGGAGATAGAGCACGTGAAGGCGATATTCCAAGCGCTCAA GTACCTCTACTCGTTCTGCATATCGGATTACTTGCCGTTCCTGAGAGGGTTGAACCTTGACGGCCAGGAGAAGCTCGTAAAGGACGCGAATAAGACGATT AGGGATCTCCAGAGGCCGATTATCGACGAGAGGATGAGACAGTGGCAGAGCGGCGAGAGGAAAGAGATGGAAGATCTCACTGATGTTTTCATTACTCTCA AGGACAGTGATGGCAAGCCTCTGCTCACTCCCGACGAGATCAAGCACCAGATTGCGGTAAGCATGTGCATTTAA
AA sequence Show only first row Show all	>Lus10000239 pacid=23158775 polypeptide=Lus10000239 locus=Lus10000239.g ID=Lus10000239.BGIv1.0 annot-version=v1.0 MAMNTSDRGLSTTATSSPFTAAVTTTTPTAFIALLFALLVSIISYVNLKKRSSKAKFVANASEGAGSIVTGKNIKPVLPPSPPSWPVVGNIPELFTKKPV FRWVHNLMKEMNTDICLIRLGGFNIIPVLDPAIAREMFKKQDAIFVDRPHTVGSHAMGGGYTATIGTPYGDQWRKMRKVITSEIVSPARHKWLHQKRAEE ADNLVFYVHNLCMAGKSVDLRLTTQHYCGNVIRKMMFSKRFFGEPTADGGPGAKEIEHVKAIFQALKYLYSFCISDYLPFLRGLNLDGQEKLVKDANKTI RDLQRPIIDERMRQWQSGERKEMEDLTDVFITLKDSDGKPLLTPDEIKHQIAVSMCI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10000239 [exp]	0	1
AT5G18600			Thioredoxin superfamily protei...		Lus10033965 [exp]	3.0	0.8856
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	5.3	0.8785
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	5.9	0.8600
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10039771 [exp]	8.0	0.8561
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	8.4	0.8723
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	9.6	0.8794
					Lus10025225 [exp]	11.6	0.8792
AT3G15930			Pentatricopeptide repeat (PPR)...		Lus10010901 [exp]	14.8	0.7580
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	15.0	0.8100
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	15.3	0.7959

Compare expression of checked genes

Lus10000239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.