Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56240 65 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008344 [exp] 1520 / 0 AT5G56240 175 / 3e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G169100 [exp] 359 / 6e-106 AT5G56250 177 / 2e-45 hapless 8 (.1.2) Potri.001G472400 [exp] 346 / 3e-101 AT5G56250 203 / 8e-54 hapless 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000240 pacid=23174232 polypeptide=Lus10000240 locus=Lus10000240.g ID=Lus10000240.BGIv1.0 annot-version=v1.0 ATGGCAATGAAGAAGAGAAAACACAAGCACAAGAAATATCTGAAGCTTGCTGCACAAAGCAAAAAGCTTTTCTCGCAAAAGACTCGTGATTTGGAGCTTC GTGGAAATCATGAACGAGTTGTCGATGCGGGGAAAGGTTCTGAGAAAGAGCTTACATCTCGACAAATCACACCTCGTAATTCTGGGAACCTGAGACCATG GGTGTGTTCTAAGCCAAGAGGTTCTCCAAAAAAGATTAATAACTCAGAGGGCCAGCAGCCTGTAAGATGCCAATGGCCTTTGCCTCATAGCCTGTTAGGG GAATCTGATCAGTCATTTTTGGGGGATTCTAGTGAAGATAGCACTGGTATTCAGAGATTTACAAATCTCTCGGAGAATCTGACTTCTCCTGGAAGCTTCA ATGAGAAGCAATCCTCTCCTGTCAGAAGGAAACGTGGGAGACCCTTGTCACGGCCTGTTGTTAGTAACGATGTGGGGAAGTCTTTTAATATAGTGAAGCA AAATAGAGATCGCTTGTTGAGGCCTCCAAATGGTAGCAAGAATCAGAAAACTGCGACTGATTATAAGTCTGGTCATCCGCGGTACACTGGAGCTCCTTGC AGCTCTCAAGCAACCTTGAGTAAAGCAATAAGTTTCCCTTCTTACCAGAAAAGGGAGTTGTCTATTAGCAATCAATCTAGCAAGATTGTTAAGAAAAGTT CAAATTGGAAGGAGGGTCGAGTGCCTGTGATTGATGAAAGAGAAGATGAGTTAGCAGCCAACTATGAGGTTGATCAACTATATGATTCGATGCACAATCA CAGAGGCAATCTGCCTGAAAGTGATGCAATAAGTGAAGAACTTCCTCATGATGGGAATGATACTATGGAACCTAGAAAGATAAAAGGTATGTTATGTAAC TCGCAAGGGAAGGAAAGCTTCTTGGAGTCTGCATCACATTCTTATGACTGTCTTGACATCGCTCCTTCTGGTTTAGAAAATGCTGATTGTCTACTCGAAG AGGATGGTCTTAACTCCAGCCGAGAATTGAGGCAAGGTGCTACTTTGAGTAACTCCATGGGTACTGCAATTTACACAATGAAAGATGCTTCAGATCCTAA GTCTGCTACTTTACGATCTGTCGAAGATTACAGAGGTCTTTTAAGTGGATCTGAATCACCGACGGATACTGCTGGGCCAGATTTTGTGAATGACCATGAA ATGTTTTCTGCTGATGGCATTAGTAATGGGATGATCGGTCAAAGAAGCGAAATAGGTGCAGAATTAGATTCCGAAGCTAATCCACATGAAGATTCCTTCC CTGAGATTGACCCAATTCCTATTCCAGGACCCCCTGGGTCATTCTTGCCCAGTCCAAGAGATATGGGATCAGAAGATTTTCATGGTAATTCATCAGTGAC CACCAGCCGAGCTCAGTCCTCCTTGGATCTGGGTAATGTTGTTGATAAAGATTCCTCTAGTTCCCCAATATCTGCTGCATCAAGCTTCTCCAACTCAACT GCACATGGATGTGGCTTTGATTCAGCATCATCAGCAATTGTACCACCTAATGTTGTTGAAAGCAAGAAATCAGGAGCGGCTATTGTTGCAAGTGTTGATG GAGGGGTTCCATCAGCAATGACCGAAATGGACAAGCCAAGTTTCGAGGAACAGCATACGAGTCTTGATAAAAGCCGTATCGAAAAGGGGTCCTTTGCTGT CAGGAATGATCAGCCATGCTGTTGCCAAAGGAAGGAGAGTAGACTTGGTCCTGATTTTGTGCTGAACCAACAAGATTCTTTGCTGCTTCAACGACGAAAG ATGGCTTCTTCAATGGCAGATCCTTCTAATGATAAACAAAATGATCATAGTTCAAACCCTTTGGACGTGGGAGCTTATTTTGCTTCGTCTCCAAGCCCTT GTCCAACTTCAGGCGCTGAAAATGTGGGATTCTCGGTCATTAAGCCTCAAGTAGTTCCCTTATACGATCCTTCGAATGCTGGAGTGAGGGTTTTTGCAGG TATGTATTGTGAGTCTGGTAGTAGTCCATCTACTTCTAATCCAGTACTTCGGTTGATGGGGAAGAACTTGATGGTAGTCAACAAGGACGAGGATTCTTCT AAGCCATTGTTGCATCATCAGAATAATTCTCAAACCCCTCATTTTGCAACGTTCACTGCAATTTCTCCTGGCAATATTCAGAATCAGGAATCGCAAGCTT TCCAGCATATGGTTCCTGTACATTTTGGTGGCAACTCGCATACAGTTGGCCCTTACTTTAATGCTGGGTTGGCTAATCCTACCAGTTATATAAATTCAAA GTTTTCGCAACCGCAAACTCAAAGGTTTCGAACCCGTGGCAGTGATGAGGGCTTCCAAGTGCCCATGGAGCCTCCTCACCAGTTGAAAGATCCATCTTCG CGCTGTGCAAAGAAGATCATTGTAATTGATGATGCTCCGGAGAGGGAAATTGTCGTCAGCAATAAGGTTGTAAACTATAACGGAGTTGGTAGACCGAATG ATCATGTGATATCATCCGGCATCTTCCTGGAGGGTGTCCCGAGTTATAATCACCAGAACCACGGGCACATTCCTAGTGCTTGTTACCCTCCATTGCAAGA TTGCAGCAACCTTCATTCGGTACCTCCTACAAGGCTACCGAATGTGAGTAATAATGTGCGGTGGGCAGGTCCTGGGATGTTGAATCAAAGTCCGTTACCT GCTGCATCGTCGGCCTCCAGCAGTGTTGTACACTCTTCGTTATACTATTCTCCGAGCTTTTCATAA
AA sequence Show only first row Show all	>Lus10000240 pacid=23174232 polypeptide=Lus10000240 locus=Lus10000240.g ID=Lus10000240.BGIv1.0 annot-version=v1.0 MAMKKRKHKHKKYLKLAAQSKKLFSQKTRDLELRGNHERVVDAGKGSEKELTSRQITPRNSGNLRPWVCSKPRGSPKKINNSEGQQPVRCQWPLPHSLLG ESDQSFLGDSSEDSTGIQRFTNLSENLTSPGSFNEKQSSPVRRKRGRPLSRPVVSNDVGKSFNIVKQNRDRLLRPPNGSKNQKTATDYKSGHPRYTGAPC SSQATLSKAISFPSYQKRELSISNQSSKIVKKSSNWKEGRVPVIDEREDELAANYEVDQLYDSMHNHRGNLPESDAISEELPHDGNDTMEPRKIKGMLCN SQGKESFLESASHSYDCLDIAPSGLENADCLLEEDGLNSSRELRQGATLSNSMGTAIYTMKDASDPKSATLRSVEDYRGLLSGSESPTDTAGPDFVNDHE MFSADGISNGMIGQRSEIGAELDSEANPHEDSFPEIDPIPIPGPPGSFLPSPRDMGSEDFHGNSSVTTSRAQSSLDLGNVVDKDSSSSPISAASSFSNST AHGCGFDSASSAIVPPNVVESKKSGAAIVASVDGGVPSAMTEMDKPSFEEQHTSLDKSRIEKGSFAVRNDQPCCCQRKESRLGPDFVLNQQDSLLLQRRK MASSMADPSNDKQNDHSSNPLDVGAYFASSPSPCPTSGAENVGFSVIKPQVVPLYDPSNAGVRVFAGMYCESGSSPSTSNPVLRLMGKNLMVVNKDEDSS KPLLHHQNNSQTPHFATFTAISPGNIQNQESQAFQHMVPVHFGGNSHTVGPYFNAGLANPTSYINSKFSQPQTQRFRTRGSDEGFQVPMEPPHQLKDPSS RCAKKIIVIDDAPEREIVVSNKVVNYNGVGRPNDHVISSGIFLEGVPSYNHQNHGHIPSACYPPLQDCSNLHSVPPTRLPNVSNNVRWAGPGMLNQSPLP AASSASSSVVHSSLYYSPSFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56240			unknown protein		Lus10000240 [exp]	0	1
AT5G39450			F-box family protein (.1)		Lus10015691 [exp]	3.9	0.7419
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	13.3	0.7555
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	15.9	0.7430
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	35.0	0.7176
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	39.2	0.6689
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	43.5	0.6584
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	51.0	0.6164
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	53.9	0.6094
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	56.1	0.6977
AT4G28240			Wound-responsive family protei...		Lus10033728 [exp]	58.2	0.6854

Compare expression of checked genes

Lus10000240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.