Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08550 256 / 2e-83 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT3G57200 233 / 8e-75 unknown protein AT2G41451 219 / 8e-70 unknown protein AT3G61030 113 / 2e-29 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 113 / 4e-29 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039569 [exp] 291 / 6e-97 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 269 / 6e-90 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10018036 [exp] 238 / 3e-76 AT3G57200 705 / 0.0 unknown protein Lus10042032 [exp] 219 / 1e-68 AT3G57200 681 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G022700 [exp] 263 / 2e-86 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.003G202900 [exp] 254 / 6e-83 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.016G041900 [exp] 253 / 2e-82 AT3G57200 744 / 0.0 unknown protein Potri.006G045500 [exp] 210 / 3e-66 AT3G57200 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000243 pacid=23177786 polypeptide=Lus10000243 locus=Lus10000243.g ID=Lus10000243.BGIv1.0 annot-version=v1.0 ATGTTCAAGAAAAATTACGACCACCTACCAAAGGATACATATTTCGGCATGTACAAGGAATCCACTCGTGGTAATCCCAATTACTTCTTGACGTACGGGA ATGGGAAGTCTGTTGCTCGGGTTCAGGAACATCTTCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACTCCCAACGAAGTGAAGCTGGAAGA GGCTGCTGTGCTACATTACACTTATGCCAAATTTTCAGACTTGACTTCTAGGCGTGATCGATGTGGCTGTAAACCAACAAAGGATGATGTCAAAAGATGC TTTATGTTGGAATTTGACAGATCTGCTTTCATTATCGCTTCGACTGCAACTGAGGAAGAAATGCGGAATTGCAACAACTCAGTTGACAGCAGCAACTCAA CAAGAATCTCTGAATCTGTACCCTCAAAGAAGATGACCAAAAGCAGCTCACTAGACCAGGCAACCGCTAGGAAGGTCTTGAACTTCGACACTAACGCATT CCATGAAGCAGCAGTTCCTCCATTGCCCCCTCCAGCAGCAACTGACAACTTGATTTCAGCTTAA
AA sequence Show only first row Show all	>Lus10000243 pacid=23177786 polypeptide=Lus10000243 locus=Lus10000243.g ID=Lus10000243.BGIv1.0 annot-version=v1.0 MFKKNYDHLPKDTYFGMYKESTRGNPNYFLTYGNGKSVARVQEHLRPNGAHRWHNYMKTPNEVKLEEAAVLHYTYAKFSDLTSRRDRCGCKPTKDDVKRC FMLEFDRSAFIIASTATEEEMRNCNNSVDSSNSTRISESVPSKKMTKSSSLDQATARKVLNFDTNAFHEAAVPPLPPPAATDNLISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	0	1
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	4.1	0.8658
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	8.0	0.8493
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10042889 [exp]	13.1	0.7610
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031117 [exp]	18.4	0.7877
AT1G27210			ARM repeat superfamily protein...		Lus10010730 [exp]	19.4	0.8121
AT1G04200			unknown protein		Lus10039377 [exp]	19.4	0.7959
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	19.9	0.7807
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	24.1	0.7857
AT1G04200			unknown protein		Lus10006619 [exp]	24.7	0.8104
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	24.8	0.8384

Compare expression of checked genes

Lus10000243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.