Plant FIBer expression Database

Lus10000245 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09430 235 / 3e-78 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003976
[exp]
403 / 2e-144 AT3G09430 278 / 2e-93 unknown protein
Lus10023771
[exp]
57 / 3e-10 AT3G09430 63 / 4e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G084500
[exp]
241 / 5e-81 AT3G09430 223 / 6e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10000245 pacid=23158692 polypeptide=Lus10000245 locus=Lus10000245.g ID=Lus10000245.BGIv1.0 annot-version=v1.0
ATGACGGCGCACCCCTCGCCGGAAGCTTACTTGTCCCCGCAGATAGGAAGGTATATGGTGAATGATTGTGGTGATGGCAGATTCGATGTATCCCTACCTG
AGAACTGCGTTAAGCAGCACAGTGAAGAGAAGGAAGTAACGAGACATTGTTTGGATTTGAAGTTCCCTTCGGTCTCTTTGTTCAAGGACTACCAGAATGC
TGCGATGGCGATTCTGGAGAAGTCTGATTATGTGATGATTTCAGGACATCCTTTCATTAAGAAGTCAGGTTGGAGGAAGATATCCTGTTTCTTCAATCTG
TCCTTTGAAATCAAAGATAAGAGCATTGAATATGATGACGACCGAAATGTTCAACGAGCTGAATTTGTTGTTCGAGCTCATATGCAAGGTGGAAGGTTCT
CTGACGGTTGGGGCTCATGTGAAAGGCGCGAGAAGCGATTTTCAAAACCTAACCATGATATCCCTAGCACAGCAGAAACTCGGGCCAAGAACAAAGCTTG
CCAGGACCTGCTTGGGATTGGAGAGTATCGACCCGGTGCAAACCAGTCTCAGCACCAACAAACTTAG
AA sequence
>Lus10000245 pacid=23158692 polypeptide=Lus10000245 locus=Lus10000245.g ID=Lus10000245.BGIv1.0 annot-version=v1.0
MTAHPSPEAYLSPQIGRYMVNDCGDGRFDVSLPENCVKQHSEEKEVTRHCLDLKFPSVSLFKDYQNAAMAILEKSDYVMISGHPFIKKSGWRKISCFFNL
SFEIKDKSIEYDDDRNVQRAEFVVRAHMQGGRFSDGWGSCERREKRFSKPNHDIPSTAETRAKNKACQDLLGIGEYRPGANQSQHQQT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G09430 unknown protein Lus10000245
[exp]
0 1
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Lus10025058
[exp]
7.8 0.8365
AT5G52860 ABCG8 ATP-binding cassette G8, ABC-2... Lus10039305
[exp]
11.9 0.8076
AT1G44100 AAP5 amino acid permease 5 (.1) Lus10029703
[exp]
13.4 0.7400
AT3G57030 Calcium-dependent phosphotries... Lus10009651
[exp]
13.7 0.7481
AT1G65000 unknown protein Lus10026159
[exp]
17.7 0.6915
Lus10037800
[exp]
25.2 0.6898
AT5G26749 C2H2 and C2HC zinc fingers sup... Lus10001520
[exp]
26.4 0.7916
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10033951
[exp]
30.9 0.7935
AT2G01630 O-Glycosyl hydrolases family 1... Lus10007929
[exp]
32.0 0.7870
AT2G33845 Nucleic acid-binding, OB-fold-... Lus10002172
[exp]
55.6 0.7631

Lus10000245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.