Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20710 85 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 77 / 2e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 75 / 1e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 73 / 3e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27460 67 / 4e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 57 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 56 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 49 / 5e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 47 / 4e-06 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 46 / 6e-06 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029313 [exp] 343 / 2e-119 AT2G20710 127 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005600 [exp] 233 / 1e-79 AT2G20710 91 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10016229 [exp] 114 / 5e-30 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10000091 [exp] 89 / 6e-21 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 89 / 9e-21 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 86 / 1e-19 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 85 / 3e-19 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 76 / 3e-16 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 67 / 3e-13 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063300 [exp] 125 / 5e-34 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.011G051700 [exp] 114 / 2e-31 AT2G20710 151 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 114 / 1e-29 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 104 / 2e-26 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 104 / 3e-26 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 96 / 5e-23 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G042500 [exp] 91 / 3e-21 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 87 / 5e-20 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 84 / 7e-19 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 83 / 1e-18 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000247 pacid=23157499 polypeptide=Lus10000247 locus=Lus10000247.g ID=Lus10000247.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAGATGAAGTCTTTGCAGTTTGGGAACGTCTAAAGAAGAGCGGGAAGAAGGTTCTCAAGAAAGGGTACATGGACTTGATATCTTCCCTCA CAAAGCTGGGCGATTTCGAGGCTGCTGAGAAGATACTCGACAAGTGGGAGTCTCGGGAGAGCCCTGGTTACGATGTCCGCATCCCTAACGTCCTCGTCAG CGCCTACATGAAAGTTGGTCGTTTGGAAGAAGTCGGGGCCGTCGTGGAGAGGACGAGATCGAAAGGCGTCCAGCCACACGCAAACTCATGGCTTTCGTTG GCGGTAGGGTATCTCGAGCATCGTAAGGATGTGTTGAAGGCGGTGGAGGCGATGAAGAGAGGCGTAACGGTGTCGGAGTCAGGTTGGAAACCCGACCCGA GAGGGTTGGCCGAGTGTCTGCAGCAGTTGAAAGATGCTGGGGGAGATCGTTTGGAGGAAGCGCGAGAGCTTGTGCAATTGCTGATGGAGCAGAATGTTGT TCCTTTAGCTGTTGGAAAGAAATGGTTGGTGGATGGTTCATCTGATCGGGTTGAAGAATCGGCTGAGTGA
AA sequence Show only first row Show all	>Lus10000247 pacid=23157499 polypeptide=Lus10000247 locus=Lus10000247.g ID=Lus10000247.BGIv1.0 annot-version=v1.0 MGKKDEVFAVWERLKKSGKKVLKKGYMDLISSLTKLGDFEAAEKILDKWESRESPGYDVRIPNVLVSAYMKVGRLEEVGAVVERTRSKGVQPHANSWLSL AVGYLEHRKDVLKAVEAMKRGVTVSESGWKPDPRGLAECLQQLKDAGGDRLEEARELVQLLMEQNVVPLAVGKKWLVDGSSDRVEESAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10000247 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	15.7
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	129.3
AT5G35110			unknown protein		Lus10000078 [exp]	138.5
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	142.0
AT2G46490			unknown protein		Lus10000088 [exp]	147.1
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	158.4
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	162.2
					Lus10000109 [exp]	163.7
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	173.9
					Lus10000134 [exp]	181.6

Compare expression of checked genes

Lus10000247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.