Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58470 288 / 9e-99 nucleic acid binding;methyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005597 [exp] 344 / 2e-121 AT3G58470 230 / 3e-76 nucleic acid binding;methyltransferases (.1) Lus10016230 [exp] 340 / 3e-120 AT3G58470 204 / 4e-66 nucleic acid binding;methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063600 [exp] 316 / 4e-110 AT3G58470 282 / 2e-96 nucleic acid binding;methyltransferases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10237 [flax] [poplar] N6-adenineMlase Probable N6-adenine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10000248 pacid=23157500 polypeptide=Lus10000248 locus=Lus10000248.g ID=Lus10000248.BGIv1.0 annot-version=v1.0 ATGGAAGAGCAACAAACTTTAAGACTTGAGAGCGCTGCCGCCGGCGAAGAAGACGAAGCGCCGACGCTGAGCTCACACGCCCTCGCAGCTCTTCAGGAGT TCCTGTCGGAGCAGAACCGCTCCGAAGAAGCAGAGGAAACAAACGGGGAGACCTCCGTGGAGCTGGTCTCAGAAGATTGGAGGCTGAGCCAGTTCTGGTA CGACAAGTCAACTGCCGAAACTGTAGCCAATGAAGTCATATCGCTGTGTGGCGATTCTGGGCGGGTAGCTTGCATCGCTTGCCCTACTCTCTACGCTTAT ATCAAGAAAATTGATCCGAATCTGAGGGTTCAATTGCTGGAGTACGATGAGCGGTTTGGGAGGTACGGAGGAGATTTCACGTTTTACGATTACAACAAGC CGGAGGAGCTTCCGGCGGAGTTGAAGCAGTGTTTCAGTGTTGTGGTTGCTGATCCTCCTTATTTGAGCAAGGAGTGTTTAGAAAAGGTTGCAGAGACGGT TCCTTTTCTTGCAAAGCCTGGTCCTAGCAACTCATACGTGCTTCTGCTCACAGGAGAAGTGCAGAAGGACAGGGCTGCTGAACTGTTGGGACTGCTTCCG TGCGGGTTCCGACCTCAGCATTCGAGCAAACTCGGGAACGAGTTTCGGTTGTTCACCAACTATAACCCTGGGACGAGATTAGGAGGATGGGAACTCTAA
AA sequence Show only first row Show all	>Lus10000248 pacid=23157500 polypeptide=Lus10000248 locus=Lus10000248.g ID=Lus10000248.BGIv1.0 annot-version=v1.0 MEEQQTLRLESAAAGEEDEAPTLSSHALAALQEFLSEQNRSEEAEETNGETSVELVSEDWRLSQFWYDKSTAETVANEVISLCGDSGRVACIACPTLYAY IKKIDPNLRVQLLEYDERFGRYGGDFTFYDYNKPEELPAELKQCFSVVVADPPYLSKECLEKVAETVPFLAKPGPSNSYVLLLTGEVQKDRAAELLGLLP CGFRPQHSSKLGNEFRLFTNYNPGTRLGGWEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58470			nucleic acid binding;methyltra...		Lus10000248 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	3.2	0.9479
AT3G06790			plastid developmental protein ...		Lus10016825 [exp]	5.5	0.9303
AT5G49210			unknown protein		Lus10032604 [exp]	5.7	0.9201
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	6.3	0.9350
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	6.8	0.9389
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	6.9	0.9364
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10000904 [exp]	7.5	0.9300
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	11.4	0.9326
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	13.9	0.9278
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	15.1	0.9192

Compare expression of checked genes

Lus10000248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.