Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32300 920 / 0 SD2-5 S-domain-2 5 (.1) AT5G35370 432 / 1e-138 S-locus lectin protein kinase family protein (.1) AT2G19130 353 / 4e-109 S-locus lectin protein kinase family protein (.1) AT5G24080 342 / 6e-109 Protein kinase superfamily protein (.1) AT1G34300 348 / 6e-107 lectin protein kinase family protein (.1) AT4G00340 313 / 3e-94 RLK4 receptor-like protein kinase 4 (.1) AT5G20050 292 / 4e-90 Protein kinase superfamily protein (.1) AT5G60900 269 / 2e-78 RLK1 receptor-like protein kinase 1 (.1) AT3G24550 258 / 3e-75 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G17420 253 / 3e-75 GPK1 glyoxysomal protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002917 [exp] 1509 / 0 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 753 / 0 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028067 [exp] 439 / 2e-141 AT5G35370 844 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039315 [exp] 380 / 1e-118 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 342 / 2e-104 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10028711 [exp] 332 / 2e-103 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 329 / 2e-100 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 324 / 3e-98 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033032 [exp] 301 / 3e-93 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G254600 [exp] 1048 / 0 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.018G027300 [exp] 1042 / 0 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.002G086500 [exp] 467 / 6e-152 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G013797 [exp] 451 / 9e-146 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G061900 [exp] 382 / 2e-118 AT4G32300 402 / 3e-126 S-domain-2 5 (.1) Potri.015G026300 [exp] 377 / 2e-117 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.014G086900 [exp] 364 / 7e-113 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.019G119200 [exp] 361 / 6e-112 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G115700 [exp] 357 / 2e-110 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 357 / 2e-110 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10000249 pacid=23151319 polypeptide=Lus10000249 locus=Lus10000249.g ID=Lus10000249.BGIv1.0 annot-version=v1.0 ATGGAAGGAATCAGAAGCTTTCTGGGCTGGATTCAATTCCTCCTGCCGCTGTTTCTTCTTCAATGGCGAAATTGCACAGCTGGAGTCAGATACATAGGCA ACTTGGATCCAGGGTTCCAAGGAGCACAAATGAACTGGATTGACAACGCCGGAATCTTCCTCCTCTCCAACAACTCCCTCTACGGATTCGGATTCAGAAC CACATCCCCTGACGTCACCAAGTTCTTGCTAGTCGTCATCCATATGAGCACCACAAGACCTATCTGGGCTGCCAATAGAGGGAATCCGGTCTCCAATTCC GACAACTTCATCTTCACCACAGACGACAAAGTTTCTCTGCAGAAAGCTGGCAAGTCAATCTGGACAGCTGGCAAGTCAATTTCATCAGTTTCTTCAATTC AGTTGTTAGATTCAGGGAATTTGGTGTTTGTTGATGGTGGTGGGGAAAGGGTTTGGGAGAGCTTTGGTTATCCTACTGATACTCTCATCACAGGCCAGGA TTTCACTGAAAGTATGAGTCTTGTTAGTGATCCAGCTAGCTCTAGTAATAACTTGAGTTACACACTCCGGATAGAATCAGGAGATTTGACTCTTTCTGCA GGTTTCAGAACTCCTCAGAAGTACTGGTCGATGGCTCGCGATAATCGGCGCACCATCAACAGCAATGGAGATGGAGGTGGAGGTGTGTCAATGGCTACTA TTGAAGGGAATTCATGGAAGCTTTATGGTGGTAGTTCAAAAAGGCAGCTGCTTTCTCAGTTTATTTTCTCTGATAGCTCAGCAGGAAATGCTACGTGGAT TGTGGTTATGGGGAGTGATGGATTCATCTCTTTCTACAATCTTGATTCTGGAGGAGGAACTGTTGCGGCGGCTCCCACGAAGATACCCGACGATCCGTGT GACCGTCCGGTGTCTTGTGGGGCTTATTTGGTCTGTTCTAGTAACAATGTTTGTCAATGTCCTTCGATTCTCAGCTCTCAACAGAAATGCAATCCGGGGA TAACGAGCGATTCGTGTAAAAAAGCATCGACCGGTTCGATAATGCTGGTGGATGCTGGGAATCAGATTAACTACTTTGCACTTGGGTTTATGAAGCCAAC TATTTCAAAGACTGATTTGGAGAGGTGCAAGTCATCCTGCAGTGGGAACTGTTCTTGCCTTGCATTGTTCTTCGAGTCCGGTTCCGGAAGTTGCTTCCTT TTCGATGATTTGGGTAGCTTTACGGCAGGGTCGAGTAGTAGTCCTTCAGGGTTGAGTGCATTTATCAAAGTGTTGAACAATGGAGGAAGTAGAACAGCAA GCAGTACCGGAAACCGGTTTCCATTCGGTGCTATCATAGCGATAGCTGTCACGACTGTGTTGGTAATTGTCGGTCTAATTTTCGTGGCGTTTCGGATTTA CAGGAGGAAGAGCCAGTTGCAAGAATCTCTGAGGGGGTACTCGTCGGAAGATGACGGTACTTTCCTGGAGAATCTGTCAGGGATGCCGGTCCGGTTTAGC TACAAGGAGCTTCAGACCGCAACCAATAACTTCTCGGTCAAGCTTGGACAAGGAGGGTTTGGCTCGGTTTACCAAGGGGTTCTACCCGACGGGATGAGAC TGGCTGTGAAGAAGCTGGAAGGTATTGGCCAGGGTAAGAAGGAGTTTCGAGCCGAGGTTAGCATCATAGGGAGTGTGCATCACCATCATTTGGTGAGGCT GAAAGGGTTCTGCGCCGAAGGGAGCCACCGGATGTTGGCTTACGAGTTCATGGCGAACGGTTCATTGGAGCAATGGATCTTCAAGAGGAAGAATGAAGAA GAGCTCCTTTTGGATTGGGAGACACGGTTCAGCATTGCATTGGGGACGGCCAAAGGGCTGGCTTATCTCCACCAGGATTGCGATGTCAAGATCGTACATT GCGACATCAAGCCCGAGAATGTGCTCCTCGATGACAATTTTCTCGCCAAAGTCTCCGACTTTGGACTCGCCAAGCTGATGACCAGAGAGCAGAGCCATGT GTTCACCACCATGAGAGGCACCAGAGGGTATCTGGCACCCGAATGGATAACGAACTACGCGATCTCGGAGAAGAGCGACGTGTACAGCTACGGGATGCTA CTCCTCGAGATCATCAGCGGGAGGAAGAACTTCATCCAGCCTACCGGGGAGAACTCGTCCTCTGAGAAGTCTCATTTCCCTTCCTACGCATTCAAGATGA TGGAGGAAGGGAAGCTGAGGGAGATCCTCGACTCGAAGCTGAAGCTCGACGAGGAAGACGAGAGAGTAGGGACCGCTATCAAAGTGGCATTGTGGTGCAT ACAGGAAGACATGTCTGTGAGGCCATCTATGACCAAAGTGGTACAGATGCTCGAAGGAATCTATGCTGTTCCGAAGCCTCCGACTTCCTCGCCATTGACC GCCCGGCTCTACTCGGGGATCTTCAGGTCCATCAGCGAGGAAGGAGCTTCTTCAGGTCCATCAGATTGTAACAGTGATGCTTATCAGTCTGCTGTACGGC TTTCAGGGCCTAGATGA
AA sequence Show only first row Show all	>Lus10000249 pacid=23151319 polypeptide=Lus10000249 locus=Lus10000249.g ID=Lus10000249.BGIv1.0 annot-version=v1.0 MEGIRSFLGWIQFLLPLFLLQWRNCTAGVRYIGNLDPGFQGAQMNWIDNAGIFLLSNNSLYGFGFRTTSPDVTKFLLVVIHMSTTRPIWAANRGNPVSNS DNFIFTTDDKVSLQKAGKSIWTAGKSISSVSSIQLLDSGNLVFVDGGGERVWESFGYPTDTLITGQDFTESMSLVSDPASSSNNLSYTLRIESGDLTLSA GFRTPQKYWSMARDNRRTINSNGDGGGGVSMATIEGNSWKLYGGSSKRQLLSQFIFSDSSAGNATWIVVMGSDGFISFYNLDSGGGTVAAAPTKIPDDPC DRPVSCGAYLVCSSNNVCQCPSILSSQQKCNPGITSDSCKKASTGSIMLVDAGNQINYFALGFMKPTISKTDLERCKSSCSGNCSCLALFFESGSGSCFL FDDLGSFTAGSSSSPSGLSAFIKVLNNGGSRTASSTGNRFPFGAIIAIAVTTVLVIVGLIFVAFRIYRRKSQLQESLRGYSSEDDGTFLENLSGMPVRFS YKELQTATNNFSVKLGQGGFGSVYQGVLPDGMRLAVKKLEGIGQGKKEFRAEVSIIGSVHHHHLVRLKGFCAEGSHRMLAYEFMANGSLEQWIFKRKNEE ELLLDWETRFSIALGTAKGLAYLHQDCDVKIVHCDIKPENVLLDDNFLAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGML LLEIISGRKNFIQPTGENSSSEKSHFPSYAFKMMEEGKLREILDSKLKLDEEDERVGTAIKVALWCIQEDMSVRPSMTKVVQMLEGIYAVPKPPTSSPLT ARLYSGIFRSISEEGASSGPSDCNSDAYQSAVRLSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	0	1
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	5.3	0.7333
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	5.7	0.7526
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	7.6	0.7951
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	11.6	0.7803
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10028118 [exp]	14.7	0.6637
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	14.9	0.7768
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	16.2	0.7145
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	18.8	0.6917
AT5G12970			Calcium-dependent lipid-bindin...		Lus10017816 [exp]	20.5	0.6370
					Lus10002746 [exp]	23.4	0.7024

Compare expression of checked genes

Lus10000249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.