Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11570 428 / 5e-150 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 404 / 3e-141 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G06080 279 / 8e-91 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G19160 272 / 3e-88 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 238 / 4e-75 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 238 / 1e-74 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT5G06700 238 / 2e-73 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 233 / 5e-72 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G60790 231 / 2e-71 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT1G48880 216 / 8e-67 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021328 [exp] 591 / 0 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 547 / 0 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10029430 [exp] 503 / 2e-180 AT3G11570 443 / 2e-155 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10004225 [exp] 492 / 3e-175 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 274 / 4e-89 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10041219 [exp] 265 / 1e-85 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 265 / 3e-85 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10003734 [exp] 256 / 2e-82 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028025 [exp] 256 / 1e-81 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074800 [exp] 429 / 2e-150 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.008G203900 [exp] 283 / 8e-93 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.006G208251 [exp] 275 / 5e-91 AT3G11570 280 / 1e-91 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G054400 [exp] 268 / 1e-86 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.T171301 [exp] 240 / 7e-76 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 240 / 7e-76 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G043300 [exp] 241 / 2e-75 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.018G133000 [exp] 235 / 1e-73 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G059300 [exp] 237 / 4e-73 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 233 / 1e-72 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10000250 pacid=23175268 polypeptide=Lus10000250 locus=Lus10000250.g ID=Lus10000250.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCTGCCCGTTTCTTGATCCTGGGTTCCGGTGCCGATGTAACGGCAGGGGCGACGTGGAATACCTCGAGTGGCGGTGGCAGCCACGTGAATG TGATTTGCCCAGGTGCATTCAACGCGGGGGACTTGCTCGAAAGGGCGAGGAATGGCAGGATAGTGTTTGCCGGAGACTCGATCGGAAGGAACCAGTGGGA GTCGTTCCTGTGCATGCTAGCACAAGGAGTATCCAATGTCTCCACAATCTATGAAGTGAATGGAAACCCAATCACGAAGCACAGAGGGTTCCTCATCATG CGCTTCAGCGACTACAACCTCACAGTCGAATACTACAGGTTACCTTTCCTGGTATCCCTCGGCCGACCACCCAAGGATTCCCCGCCTGAAGTCAAGATGG GAATCCAGATCGACCAGTTGCACTGGTTCTCGAAAAGTTGGGTTGGGGCTGACGTTCTGGTGTTCAACACAGGACACTGGTGGAAGGAGGGTTACTATTT CGAGGAAGGCGGTGAACTAAACACATCGATGGGAGTAATGGAAGCATTCGAGAAATTGCTGCTAACGTGGAAGAAATGGGTGACACAGAATTTGGATGGT GAAAGGAGTCATGTTTTCTTTCGCAGTTATTCTCCTGCACATTACAGGAACGGGACATGGAATGAAGGAGGGCATTGCGATCTGGACCTCCGACCAGTGA CGAATCCGGAACTTCTAGAACCTGAGCCGAGAACCAACCGACCCATCTCTGAGGTGATTACAGAGATGAGAAGGATGAACAAGAAAGTTGAGTACTTGAA CATTACACATCTGACAGAGTACAGATTCGACGGCCACCCGTCACGGTACCGGGAACCAGGAACTCCGCAGGAAGCTCCACAAGACTGCAGTCACTGGTGC CTTCCAGGAGTCCCAGATGTGTGGAATGAGATATTGTATGCTCACTTGGTGTCAATGGGATTCAGAACTAAATGA
AA sequence Show only first row Show all	>Lus10000250 pacid=23175268 polypeptide=Lus10000250 locus=Lus10000250.g ID=Lus10000250.BGIv1.0 annot-version=v1.0 MGKAARFLILGSGADVTAGATWNTSSGGGSHVNVICPGAFNAGDLLERARNGRIVFAGDSIGRNQWESFLCMLAQGVSNVSTIYEVNGNPITKHRGFLIM RFSDYNLTVEYYRLPFLVSLGRPPKDSPPEVKMGIQIDQLHWFSKSWVGADVLVFNTGHWWKEGYYFEEGGELNTSMGVMEAFEKLLLTWKKWVTQNLDG ERSHVFFRSYSPAHYRNGTWNEGGHCDLDLRPVTNPELLEPEPRTNRPISEVITEMRRMNKKVEYLNITHLTEYRFDGHPSRYREPGTPQEAPQDCSHWC LPGVPDVWNEILYAHLVSMGFRTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	0	1
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	1.4	0.9189
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10024071 [exp]	1.4	0.9176
AT5G38260			Protein kinase superfamily pro...		Lus10027119 [exp]	3.2	0.8803
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	3.3	0.8586
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	4.2	0.8748
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	5.3	0.8469
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	5.3	0.8843
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	5.7	0.8846
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	5.7	0.8621
AT5G59700			Protein kinase superfamily pro...		Lus10020474 [exp]	6.9	0.8504

Compare expression of checked genes

Lus10000250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.