Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28290 76 / 7e-17 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06010 53 / 7e-09 ATCHR12 Homeotic gene regulator (.1) AT5G18620 52 / 1e-08 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 51 / 2e-08 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G19310 50 / 4e-08 Homeotic gene regulator (.1) AT2G46020 50 / 8e-08 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G44800 42 / 3e-05 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033980 [exp] 89 / 2e-21 AT2G28290 720 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10012798 [exp] 87 / 5e-21 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10014764 [exp] 55 / 1e-09 AT2G46020 1226 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10033967 [exp] 54 / 4e-09 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10012813 [exp] 54 / 4e-09 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2) Lus10036371 [exp] 52 / 1e-08 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10036223 [exp] 45 / 4e-06 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10038363 [exp] 45 / 4e-06 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10034064 [exp] 42 / 3e-05 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019150 [exp] 84 / 1e-19 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 82 / 3e-19 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G205600 [exp] 55 / 1e-09 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 54 / 2e-09 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.014G086500 [exp] 51 / 3e-08 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.002G160900 [exp] 50 / 7e-08 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.010G091200 [exp] 49 / 1e-07 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.008G149900 [exp] 49 / 1e-07 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.001G123400 [exp] 43 / 2e-05 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 40 / 0.0001 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000251 pacid=23161389 polypeptide=Lus10000251 locus=Lus10000251.g ID=Lus10000251.BGIv1.0 annot-version=v1.0 ATGAGTAGGCTTCTTGATGTTATGGAAGAGTATCTCACAACGATACCTTCATGTCGTGTGGATGGTCATACTTCTGTTGGTGATCGTGGTGCACTTATTG ATATTTTTAACGAACAAAATTCTCCATTATTCATCTTTCTGCTCAGGCTGCAGAGACTGTCATCATATTTGACAGATACTGGAATCCTCAGGTTATTGAG TAGACTTTATAATATTGGTGTTGAGAGCATTCTAACTGTGTTTTCCCCGCTTTATAATATGTTTTTTTTTCGTATCTTTAGATGGATCTTCAAGACACAG GCTAGGGCTCACAGGATTGACCAGAAAAGGGACGTTCTCGTTCGGCAGCTGCCCATGTATTGGACGATGATGCTTTGA
AA sequence Show only first row Show all	>Lus10000251 pacid=23161389 polypeptide=Lus10000251 locus=Lus10000251.g ID=Lus10000251.BGIv1.0 annot-version=v1.0 MSRLLDVMEEYLTTIPSCRVDGHTSVGDRGALIDIFNEQNSPLFIFLLRLQRLSSYLTDTGILRLLSRLYNIGVESILTVFSPLYNMFFFRIFRWIFKTQ ARAHRIDQKRDVLVRQLPMYWTMML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10000251 [exp]	0	1
AT1G63060			unknown protein		Lus10000001 [exp]	15.8
AT5G26150			protein kinase family protein ...		Lus10000068 [exp]	130.4
AT5G35110			unknown protein		Lus10000078 [exp]	139.6
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10000082 [exp]	143.2
AT2G46490			unknown protein		Lus10000088 [exp]	148.3
AT4G09160			SEC14 cytosolic factor family ...		Lus10000102 [exp]	159.7
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10000107 [exp]	163.6
					Lus10000109 [exp]	165.1
AT3G07565			Protein of unknown function (D...		Lus10000123 [exp]	175.4
					Lus10000134 [exp]	183.0

Compare expression of checked genes

Lus10000251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.