Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61610 350 / 4e-121 Galactose mutarotase-like superfamily protein (.1) AT4G23730 294 / 2e-99 Galactose mutarotase-like superfamily protein (.1) AT5G57330 271 / 2e-90 Galactose mutarotase-like superfamily protein (.1) AT5G14500 243 / 2e-79 aldose 1-epimerase family protein (.1) AT3G01590 235 / 3e-76 Galactose mutarotase-like superfamily protein (.1.2) AT4G25900 210 / 2e-66 Galactose mutarotase-like superfamily protein (.1) AT5G66530 77 / 7e-16 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003035 [exp] 459 / 1e-164 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 459 / 1e-164 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 376 / 1e-131 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 371 / 1e-129 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 317 / 1e-108 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 317 / 2e-108 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 273 / 1e-90 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 271 / 3e-90 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 259 / 2e-85 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167200 [exp] 340 / 2e-117 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 309 / 3e-105 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 290 / 1e-97 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 286 / 3e-96 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 271 / 2e-90 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 270 / 1e-89 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 247 / 5e-81 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 81 / 3e-17 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10000254 pacid=23174875 polypeptide=Lus10000254 locus=Lus10000254.g ID=Lus10000254.BGIv1.0 annot-version=v1.0 ATGGGTCATCATTCTACGGTCATAGAAATCACAAAGGATAGCAATGGCATCGACCAGGTTCTGCTCCGGAATCCGAATGGTGGTTCTGCTAAGGTCAGTT GTCATGGAGCACAAGTGGTTTCATGGAGGAATGAACGAGGTGAAGAACTTCTCTTCACAAGTAACAAGTTTGAACTCTGCTGTGCGCCAATATTGAAGCA GCCGAAGGCAATAATGAGGGGAGGGGTCCCAATCTGCTTCCCTCAATTCGGCAACTGTGGTTCCCTCGAACATCAAGGATTCACCAGGTACAAAGTTTGG AGGGTTGATGAAGATCCTCCTCCTTTGCACAGTCATGATTCTTGTGGTAGATCGTTCGTCGACCTCGTGTTTAAATCGTGTGAAGAAGACCTTAAATGCT GGCCTCATAGCTTCGAATTCCAGATGAGGGTGGCGCTTTCGACTAACGGGGATTTGATGCTGGCATCCCGAATCCGGAATGTCAATGGGAAGGCATTTAG CTTTTCGTTCGGATATCACACACATCTCTCAGTTTCAGACATCAGTAAGGATAGAAGGACTCTAAACTCTCGACTACTTAGACAACCTCTGCCACCGAGA ACAATGCACAGAGGGAGATGCAATAACCTTCAAATCCGAGTGTTTGGCACCAAAGTTGTTGCAATACTTGATCATGAGCTGAAGCGGACATATGTTGTAA GAAAAGAGGGAGGTAACAATGTGGAACCGTGGGAGAAGAAATCGAGGTCGATGCCCAATTTCGGAGACGAAGAGTATAGAAAGGTGGTCTGTGTGGACGG AGCTGCGATCAAGAAACCCATCACACTGAAGCCTGGGGAGGAAGGGGCAGGCCGGATTCAGATATCGATTGTGACTTCCAGTTTTTGTAATCTCTAA
AA sequence Show only first row Show all	>Lus10000254 pacid=23174875 polypeptide=Lus10000254 locus=Lus10000254.g ID=Lus10000254.BGIv1.0 annot-version=v1.0 MGHHSTVIEITKDSNGIDQVLLRNPNGGSAKVSCHGAQVVSWRNERGEELLFTSNKFELCCAPILKQPKAIMRGGVPICFPQFGNCGSLEHQGFTRYKVW RVDEDPPPLHSHDSCGRSFVDLVFKSCEEDLKCWPHSFEFQMRVALSTNGDLMLASRIRNVNGKAFSFSFGYHTHLSVSDISKDRRTLNSRLLRQPLPPR TMHRGRCNNLQIRVFGTKVVAILDHELKRTYVVRKEGGNNVEPWEKKSRSMPNFGDEEYRKVVCVDGAAIKKPITLKPGEEGAGRIQISIVTSSFCNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61610			Galactose mutarotase-like supe...		Lus10000254 [exp]	0	1
AT5G38600			Proline-rich spliceosome-assoc...		Lus10034080 [exp]	6.6	0.8003
					Lus10000538 [exp]	14.8	0.7768
AT3G49140			Pentatricopeptide repeat (PPR)...		Lus10038836 [exp]	23.7	0.7872
AT4G10810			unknown protein		Lus10012620 [exp]	28.6	0.6810
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	35.5	0.7701
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009032 [exp]	40.6	0.7611
AT2G38780			unknown protein		Lus10019776 [exp]	42.2	0.7593
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10030381 [exp]	58.2	0.7514
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10014353 [exp]	59.2	0.6945
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	60.0	0.7181

Compare expression of checked genes

Lus10000254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.