Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61620 258 / 2e-88 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 58 / 1e-10 3'-5'-exoribonuclease family protein (.1) AT3G46210 50 / 9e-08 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT5G14580 43 / 6e-05 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005148 [exp] 287 / 4e-99 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 284 / 6e-98 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 67 / 1e-13 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 65 / 6e-13 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10009221 [exp] 47 / 1e-06 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10008763 [exp] 45 / 9e-06 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10022250 [exp] 45 / 9e-06 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G094300 [exp] 291 / 2e-101 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 66 / 4e-13 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 62 / 4e-12 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.018G043600 [exp] 48 / 6e-07 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.006G239100 [exp] 42 / 6e-05 AT3G46210 295 / 4e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.001G347900 [exp] 40 / 0.0003 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10000255 pacid=23174876 polypeptide=Lus10000255 locus=Lus10000255.g ID=Lus10000255.BGIv1.0 annot-version=v1.0 ATGGCTAATTTCAGTACTGGTGACCGCAAGCGAAAACCCAAGGGAGATAGGCGATCAACAGAGATATCTTTAGTTATCCGTCAGACTATGGAAGCCTGCA TATTGACTCACTTAATGCCCCGTTCTCAGATAGATATCTATGTCCAAGTTCTTCAAGCTGATGGAGGAACTAGATCTGCATGTATAAATGCTGCTGTATT GGCCCTAGCTGATGCCGGGATCCCAATGTCTGACCTTGTGACTTCCTGCAGTGCTGGTTACCTCAACAGCACTCCTCTGCTCGATCTGAATTATCTTGAA GATAGTGCTGGAGGTCCTGATGTTACCGTCGGTATTCTACCAACGCTAGACAAAGTCACCCTTCTTCAGATGGACGCCAAGTTACCAGTTGATATCTTTG AAAACGTTATGCAACTGGCAACCGAAGGCTGCAAGGCGATAGCAACTTACATACGTGAGATATTGCTTGAGAACACCAAGCAACTAGAGTATCGACGGGG CATATGA
AA sequence Show only first row Show all	>Lus10000255 pacid=23174876 polypeptide=Lus10000255 locus=Lus10000255.g ID=Lus10000255.BGIv1.0 annot-version=v1.0 MANFSTGDRKRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIYVQVLQADGGTRSACINAAVLALADAGIPMSDLVTSCSAGYLNSTPLLDLNYLE DSAGGPDVTVGILPTLDKVTLLQMDAKLPVDIFENVMQLATEGCKAIATYIREILLENTKQLEYRRGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	0	1
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10001904 [exp]	3.5	0.8617
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009653 [exp]	4.2	0.8634
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	4.5	0.8329
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	5.7	0.8474
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	6.9	0.8498
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	8.8	0.8285
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	9.5	0.8220
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10012954 [exp]	11.0	0.8112
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	12.2	0.8009
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	12.6	0.8448

Compare expression of checked genes

Lus10000255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.