Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04530 169 / 2e-48 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G17940 118 / 6e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 107 / 4e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 106 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 99 / 3e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 74 / 1e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 68 / 5e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 66 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014468 [exp] 804 / 0 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 733 / 0 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024949 [exp] 151 / 1e-40 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022877 [exp] 148 / 2e-40 AT4G17940 121 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 120 / 1e-30 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 119 / 6e-30 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 102 / 2e-24 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 101 / 6e-24 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 100 / 2e-23 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G065400 [exp] 342 / 3e-114 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 318 / 2e-103 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G256900 [exp] 156 / 8e-43 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 120 / 9e-31 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 112 / 1e-27 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 110 / 5e-27 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 103 / 2e-24 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 96 / 3e-22 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 76 / 2e-14 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 74 / 6e-14 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000257 pacid=23181304 polypeptide=Lus10000257 locus=Lus10000257.g ID=Lus10000257.BGIv1.0 annot-version=v1.0 ATGCTGCTGAGGACCTCCTCAAGCTCAGGGATAAAAGGTTCTGTCTTTTCTGTTGTTTCAGAAAGCCCACTTGACAATCCCACTAGTAATTTCAGGCACT CCCCTTCTCACCTCAGCTTCCCACCACCGCAGCTTAACCAAGACAGTACTGGTGGTGAAAGAAGAAGAAGAAGAGGAGGGTTTAGAAGGGCTTGGTCTGA AAGTAACATTGATAGATTCACTGCTCCTTCTTGTGATTATTCTAAACAGCTACAGTCTCTAACTCCTAGGCGATATCCAACCAGAAAGAGGATGCTTCAC TCAGCTCCTTCCTTCTCCATCTTCACTGCCGATGAAGAAGAAGAGGGTGAACAAAAAGATGAGGGTTTGGTCAGAACTGTGACGATTGGGGAGAATATTG AGGAAGGTGGAGATTTCAGCTTTGGGAAGAGCATGGGGTTAATTGTTGAGGAAGGGGAAGAGACTGAACAACAACCAGAGGGAGATGAAAAAGATGATGG AGTGGGGAAGCTGGGTTTGATCTTCACTGGAGTTGTGACGACGAATCTTGGTGGAGTTGGAGATGAGGACGAACCTGCTAGCCCTCCCATGTATCTTGCT GCTGGGCTAGGGTTTGACAGTATTGATTTCCAGTCAGCTACTGGTGGAGATGTTGCTTCTTTGCTTGACTTTGATGAGAGTGGTGATTTGGAAGAGTATT ACAGGAAGATGCTTGATCAATTCCCCAGCCACACTTTATTCCTCAGGAATTATGCTCATCTCTTGCAGTCGAAGGGTGACTTCCATGGCGCTGAAGAATA TTACCACAGGGCAATTTTGGTGGAGCCTGAAGATGGTGAGATTTTGATGCAGTATGGCAAACTGGTGTGGGAAGTCCACCATGACAGAGATAGAGCAAAG CATTTCTTTGAGCGTGCAGCTGAAGCAGCACCTCAAGACAGCAACGTACTTGCGGCATATGCTAGTTTTCTCTGGGAAATAAGTGATGAAGATGAAGATG ATAATAAATTCCAGATGGAACAATTGAAGGTTACAAACCCCATTATCAGTGGCAAAGAGGAACACATCATCACTGGAAAAAACAATGAGGTGAATGTGGA GGAGTATTACAAGAGAATGGTGGATGAGAACCCGAACAATGCTCTAGTTCTCAGAAACTACGCTCAGTTTCTATCTCAGCCTAAAGGAAACCTGCAAGGA GCGGAGGAGTACTACTCACGAGCGATACTGGCCGATCCTAATGATGGAGAGATCTTATCTCAGTATGCAAGACTTGTGTGGGAAGTCCACCACGACCAGA AGAAGGCCTCATCTTACTTTGAAAGGTCAGCTCAAGCCTCCCCTGCAGATAGCCAAGTTCTGGCAGCATATGCTAGTTTCCTGTGGGAGACGGAGGAAGA AGAGGACGAAGAAACCGAGCCATCGAGTCAGTTTCTTGGTCGTGAAGGGGCAATGGTCACAGCAGCTAACTGA
AA sequence Show only first row Show all	>Lus10000257 pacid=23181304 polypeptide=Lus10000257 locus=Lus10000257.g ID=Lus10000257.BGIv1.0 annot-version=v1.0 MLLRTSSSSGIKGSVFSVVSESPLDNPTSNFRHSPSHLSFPPPQLNQDSTGGERRRRRGGFRRAWSESNIDRFTAPSCDYSKQLQSLTPRRYPTRKRMLH SAPSFSIFTADEEEEGEQKDEGLVRTVTIGENIEEGGDFSFGKSMGLIVEEGEETEQQPEGDEKDDGVGKLGLIFTGVVTTNLGGVGDEDEPASPPMYLA AGLGFDSIDFQSATGGDVASLLDFDESGDLEEYYRKMLDQFPSHTLFLRNYAHLLQSKGDFHGAEEYYHRAILVEPEDGEILMQYGKLVWEVHHDRDRAK HFFERAAEAAPQDSNVLAAYASFLWEISDEDEDDNKFQMEQLKVTNPIISGKEEHIITGKNNEVNVEEYYKRMVDENPNNALVLRNYAQFLSQPKGNLQG AEEYYSRAILADPNDGEILSQYARLVWEVHHDQKKASSYFERSAQASPADSQVLAAYASFLWETEEEEDEETEPSSQFLGREGAMVTAAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	0	1
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	4.9	0.8847
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	4.9	0.8856
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	8.7	0.8912
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	9.5	0.8705
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	13.3	0.8694
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	17.2	0.8771
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	17.8	0.8838
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	19.0	0.8413
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	21.7	0.8707
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	23.4	0.8702

Compare expression of checked genes

Lus10000257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.