Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 141 / 4e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011037 [exp] 439 / 8e-158 AT1G32730 132 / 2e-36 unknown protein Lus10001085 [exp] 234 / 6e-76 AT1G32730 253 / 1e-82 unknown protein Lus10040132 [exp] 228 / 1e-73 AT1G32730 243 / 2e-78 unknown protein Lus10003008 [exp] 152 / 3e-47 AT1G32730 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085901 [exp] 204 / 6e-64 AT1G32730 325 / 3e-110 unknown protein Potri.001G148500 [exp] 192 / 2e-59 AT1G32730 315 / 5e-106 unknown protein Potri.005G234200 [exp] 41 / 0.0006 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000258 pacid=23177788 polypeptide=Lus10000258 locus=Lus10000258.g ID=Lus10000258.BGIv1.0 annot-version=v1.0 ATGGTGGCTTCGTCTCCGGCGCCGATCATCAACACCTCCGACTCTAGTCTCACCCCCACCGCCGCCGCTTCAGGATCGCAACCCAAGACTGTCCGTCACG TCAATAGACCCAAGTGCATGCAGTGTGGAAATCTCGCTCGCTCCAGGTGTCCGTATCAGTCCTGCAAGAGCTGCTGCTCAAAAGCCCAGAATCCATGCCA CATTCATGTTCTGAAAGCAAATGCAACCACTCTTCCAGACAAGGCGCCATCGGCGACTATGATTTCTTTCGATCAACTATCAGTCGAATCATCTCCTGCT ATGAGCTCTCTTCGTGCTGCATCACTCGTTCAAAAACTCTCAAACAGATTCACCCAACTCAACAAGGCACAAACTCGACATTCAAGGAACCCACCGATGA CAAAGGAAGCTGTGGCCATTAAGAGAACCCTCGAGAAACAGAACGAATCTTACAATCGGTACATGCAGAACATAAGCTTGCTAGAGGAAGCATTCTCCAT GAAACTCATGCAGGGGAGCTCGTCGCAAGGTGTAACGATTACTGATAGCGATAATGCTGCTGCGAAGAAGAAGAGGAAGCAACGGATCGTTGACGAATGG GTGAAGAAGCTGGAGGAATGGGAGCTCAGAAGAAGACCGGAAAAGGCGAAAACTTGGTCTGATCGTAGGGCTTCAACAAGCAAGAACGAGGCGGATTCAA GAAAAGGTATGGATGATCAGGGAATTGTTAGTAGGGTTGATGCACATTTTACTTCCCTGGCAAAGATAGCTAGGAAATGA
AA sequence Show only first row Show all	>Lus10000258 pacid=23177788 polypeptide=Lus10000258 locus=Lus10000258.g ID=Lus10000258.BGIv1.0 annot-version=v1.0 MVASSPAPIINTSDSSLTPTAAASGSQPKTVRHVNRPKCMQCGNLARSRCPYQSCKSCCSKAQNPCHIHVLKANATTLPDKAPSATMISFDQLSVESSPA MSSLRAASLVQKLSNRFTQLNKAQTRHSRNPPMTKEAVAIKRTLEKQNESYNRYMQNISLLEEAFSMKLMQGSSSQGVTITDSDNAAAKKKRKQRIVDEW VKKLEEWELRRRPEKAKTWSDRRASTSKNEADSRKGMDDQGIVSRVDAHFTSLAKIARK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32730			unknown protein		Lus10000258 [exp]	0	1
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	1.0	0.9152
AT3G05610			Plant invertase/pectin methyle...		Lus10020681 [exp]	1.7	0.8556
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	4.8	0.7702
					Lus10003370 [exp]	5.3	0.8650
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004181 [exp]	6.5	0.7852
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	7.5	0.8228
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	8.4	0.6727
AT2G43870			Pectin lyase-like superfamily ...		Lus10011417 [exp]	8.9	0.8526
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	10.0	0.8526
					Lus10039432 [exp]	11.0	0.8526

Compare expression of checked genes

Lus10000258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.