Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 216 / 1e-64 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04600 209 / 4e-62 ATXIA, XIA myosin XI A (.1) AT1G04160 208 / 1e-61 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G33240 194 / 6e-57 ATXID, XID myosin XI D (.1) AT4G28710 192 / 5e-56 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT1G17580 187 / 2e-54 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G20290 186 / 5e-54 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT1G54560 182 / 1e-52 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT4G33200 171 / 6e-49 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) AT1G08730 167 / 2e-47 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023696 [exp] 420 / 1e-135 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 329 / 1e-104 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10043153 [exp] 328 / 1e-103 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10011919 [exp] 225 / 1e-69 AT5G43900 978 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 226 / 1e-67 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10003315 [exp] 187 / 3e-54 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10005521 [exp] 186 / 4e-54 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10017160 [exp] 182 / 1e-52 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10021570 [exp] 182 / 1e-52 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174500 [exp] 269 / 4e-83 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.002G254300 [exp] 228 / 1e-68 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.019G013800 [exp] 190 / 2e-55 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.013G043900 [exp] 188 / 8e-55 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G199200 [exp] 181 / 3e-52 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.006G220000 [exp] 176 / 2e-50 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.006G145700 [exp] 170 / 2e-48 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 164 / 2e-46 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 158 / 3e-44 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.010G062480 [exp] 130 / 1e-38 AT2G33240 146 / 2e-41 myosin XI D (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000260 pacid=23176300 polypeptide=Lus10000260 locus=Lus10000260.g ID=Lus10000260.BGIv1.0 annot-version=v1.0 ATGGAGAAGAAGGTAGGATTTTACGAAGGAAAACCAGTGGCAGCAATTACCATTTACAGGTGCCTTATTCAATGGAGTGCATTTGAAGCAGAAAAAACAA GTATCTTTGATCGTCTTATTCAGACAATTGGTACTGCATTTGAGAACCAAGATGACAATGACCAGGTGGCCTATTGGCTCTCTAATACTACAATGTTGTT GTTCTTACTTCAACGGACTCTGAAAGGCAACGGTGGGAGCCAAACCCCAGCTGCCCCAACATCATTTTTCGAACGGATGACTCAAGGTTTCCGCTCGGCT GCCGCATTTAGTGACGTGAGAGTTGGTAAAGATTTTATACTTGTGGTTGAGCCTAAATACCCGGCGTTGCTTTTTAAGCAACAGCTTACAGCATATGTGG AAACAATGTATGGCATAATGCGGGACAATCTAAAAGGAGAGTTGTTACCTTTGTTGGCTTCATGTATCCAGTTGGTTATTGAAACCGTCCAGGCACCCAA GGTAAAGGGGAATGATCTAGGAGCCTCAGACAAGTCATCTGGGCAAACTGGTCCATCAAGTAACTGGAACAGTATCGTGGACAACCTTGACGCATTGCTG ACTACAATGAAAGAAAACTTTGTATGGAGCTTTTTTCATATCATCCAAGTCTTTCACCTCGTTTTGGTCCTCTATGATTAA
AA sequence Show only first row Show all	>Lus10000260 pacid=23176300 polypeptide=Lus10000260 locus=Lus10000260.g ID=Lus10000260.BGIv1.0 annot-version=v1.0 MEKKVGFYEGKPVAAITIYRCLIQWSAFEAEKTSIFDRLIQTIGTAFENQDDNDQVAYWLSNTTMLLFLLQRTLKGNGGSQTPAAPTSFFERMTQGFRSA AAFSDVRVGKDFILVVEPKYPALLFKQQLTAYVETMYGIMRDNLKGELLPLLASCIQLVIETVQAPKVKGNDLGASDKSSGQTGPSSNWNSIVDNLDALL TTMKENFVWSFFHIIQVFHLVLVLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	0	1
					Lus10033157 [exp]	5.6	0.7224
					Lus10000458 [exp]	10.2	0.6801
AT2G30480			unknown protein		Lus10034450 [exp]	16.2	0.6389
AT5G41620			unknown protein		Lus10028746 [exp]	17.2	0.6757
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	19.6	0.6890
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	23.2	0.6412
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	25.1	0.6353
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	25.7	0.6566
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	29.0	0.6454
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	44.5	0.6430

Compare expression of checked genes

Lus10000260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.