Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62660 404 / 4e-141 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 378 / 1e-130 GATL5 galacturonosyltransferase 5 (.1.2) AT4G02130 371 / 5e-128 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 273 / 6e-89 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 267 / 5e-87 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G24170 254 / 1e-81 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G06260 239 / 3e-76 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 225 / 4e-71 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 221 / 2e-69 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 216 / 2e-67 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010025 [exp] 522 / 3e-175 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10002440 [exp] 438 / 2e-153 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10001461 [exp] 401 / 2e-140 AT3G62660 374 / 8e-130 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 263 / 1e-85 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 261 / 1e-84 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 261 / 7e-84 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 258 / 3e-83 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10012765 [exp] 243 / 9e-78 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034012 [exp] 240 / 7e-77 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200200 [exp] 423 / 2e-148 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.014G125000 [exp] 409 / 7e-143 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 272 / 1e-88 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 247 / 5e-79 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 246 / 6e-79 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 240 / 9e-77 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.014G040300 [exp] 238 / 9e-76 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 235 / 7e-75 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G018100 [exp] 232 / 1e-73 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.007G031700 [exp] 232 / 1e-73 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10000262 pacid=23166966 polypeptide=Lus10000262 locus=Lus10000262.g ID=Lus10000262.BGIv1.0 annot-version=v1.0 ATGCTGTGGATTATGCGATTCTCCGGATTCGTCTCCGCCGCAATGGCGATGATTATCCTCTCTCCTTCGCTCCAATCGTTCCCTCCGGCGGAAGCAATCC GATCCTCTCACCTCGACAGCCACCTCCGTCTTCACCGCGGATTATCCTTCCGGAAGGCTCCTGTATTCCACAATGCCGCCGAATGTAGGTCGTCAAACCG GCGGAGTTTCGGCGTCTGCGATCCTTCCTTAGTCCACGTCGCGATTACGCTCGACGTTGAGTACCTCCGCGGCTCTGTCGCTGCGGTTCATTCGATTCTG CAGCACTCGATGTGTCCGGAGAGCGTGTTCTTTCATTTCCTGGTCTCGGCGACGAATATGGAAACCCTTGTCCGGTCAACTTTCCCCGAATTGATGTTCA AGGTGTATTACTTCGATCCGGAGATCGTGAGGAGCTTGATCTCGATGTCGGTGAGGCAGGCTCTAGAGCAGCCGCTGAATTACGCGAGGAATTACCTCGC CGATCTGCTGGAGCCCTGCGTCCGCCGCGTCATCTACCTGGACTCCGATTTGGTTGTCGTCGACGACATTACCAAGCTGTGGACGACGAGCTTGGGGAAC CGGACGATCGGCGCGCCGGAGTACTGCCACGCCAACTTCAGCAAGTACTTCACGGCGAGGTTCTGGTCGCTAGAGAAGAGGTACTCGCTGACGTTCGACG AGCGGAGGCCGTGCTACTTCAACACCGGGGTGATGGTGATAGATCTGGTGAAATGGAGAAGAGTCGGCTACACGAAGCAGATAGAGAGNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTCGAGCGAGGAGGGAGAACCCGT ACCACAGCCTCGACTCCAGGCGGCCGTGTCCGCTTGATGCTCTATGGGCACCTTACGACCTGTACGGACACTCGCGCTGA
AA sequence Show only first row Show all	>Lus10000262 pacid=23166966 polypeptide=Lus10000262 locus=Lus10000262.g ID=Lus10000262.BGIv1.0 annot-version=v1.0 MLWIMRFSGFVSAAMAMIILSPSLQSFPPAEAIRSSHLDSHLRLHRGLSFRKAPVFHNAAECRSSNRRSFGVCDPSLVHVAITLDVEYLRGSVAAVHSIL QHSMCPESVFFHFLVSATNMETLVRSTFPELMFKVYYFDPEIVRSLISMSVRQALEQPLNYARNYLADLLEPCVRRVIYLDSDLVVVDDITKLWTTSLGN RTIGAPEYCHANFSKYFTARFWSLEKRYSLTFDERRPCYFNTGVMVIDLVKWRRVGYTKQIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXGRARRENPYHSLDSRRPCPLDALWAPYDLYGHSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	0	1
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	1.0	0.9086
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	2.4	0.8714
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	4.5	0.8768
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10009387 [exp]	5.6	0.8046
AT3G01810			unknown protein		Lus10041590 [exp]	5.9	0.8596
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	6.0	0.8203
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	6.3	0.8437
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	7.5	0.8638
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	8.2	0.7773
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	8.5	0.8549

Compare expression of checked genes

Lus10000262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.