Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35730 54 / 1e-09 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006405 [exp] 62 / 1e-11 AT5G08300 80 / 2e-17 Succinyl-CoA ligase, alpha subunit (.1) Lus10010187 [exp] 60 / 1e-10 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10017389 [exp] 59 / 1e-10 AT5G08300 588 / 0.0 Succinyl-CoA ligase, alpha subunit (.1) Lus10003877 [exp] 55 / 2e-09 AT5G23250 198 / 6e-63 Succinyl-CoA ligase, alpha subunit (.1.2) Lus10035025 [exp] 46 / 2e-06 AT1G68585 84 / 9e-22 unknown protein Lus10021686 [exp] 44 / 9e-06 AT1G68585 92 / 5e-25 unknown protein Lus10017331 [exp] 44 / 1e-05 AT5G08300 171 / 5e-52 Succinyl-CoA ligase, alpha subunit (.1) Lus10010186 [exp] 0 / 1 AT5G08300 116 / 6e-33 Succinyl-CoA ligase, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110500 [exp] 92 / 2e-24 AT2G35730 70 / 7e-17 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G126800 [exp] 44 / 7e-06 AT1G68585 92 / 3e-25 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10000263 pacid=23169473 polypeptide=Lus10000263 locus=Lus10000263.g ID=Lus10000263.BGIv1.0 annot-version=v1.0 ATGGTCGCATTCTCCGACAAGTCACTCATGCACTTGGAAGACTTGAGTCTTCCCAGGATTCAGGTGGTAGTGGTGACGGCGAGCATGGCGTGCACACAGT GTCGCCAAAGAGTCTCAACTCTTCTTTCCAGAATGGCTTCAGGGTTGATCGAGTACACTGTGGATGTTCGTGGCAAACAAGTAGTTTTCAAAGGAGAAAC TGAACTTTGTCCTGGAAAGTTCAGTATTAGTGTCAGGAAGAAGAAACAGCGACGCCATTTACTGAAGTGTTTTTTCCCGATTCCGTCTTCTCGCCGGCTC TTGAATCGTTTCCCGATTCCGTCTTCTCGCCGGCTCTTGAATCCGTTTCCCGATTTCGCCTTCTCATCAAGCCACCAGACTCGCGTGTGTTCTTATCACC TCCCTCTCCTTCTCCTCCCAAACTTTATTGCAATCGCGGTCCTTCGCCTCCGATCGCGGCCGCTTCCGGTGTTTGTCGACAAGAACACACGCCGTAGTTT GCCAGGGAATCATCGGCAAGAACGGGAATTTTCACACCGAACAAGCCATTGA
AA sequence Show only first row Show all	>Lus10000263 pacid=23169473 polypeptide=Lus10000263 locus=Lus10000263.g ID=Lus10000263.BGIv1.0 annot-version=v1.0 MVAFSDKSLMHLEDLSLPRIQVVVVTASMACTQCRQRVSTLLSRMASGLIEYTVDVRGKQVVFKGETELCPGKFSISVRKKKQRRHLLKCFFPIPSSRRL LNRFPIPSSRRLLNPFPDFAFSSSHQTRVCSYHLPLLLLPNFIAIAVLRLRSRPLPVFVDKNTRRSLPGNHRQEREFSHRTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35730			Heavy metal transport/detoxifi...		Lus10000263 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026819 [exp]	15.5	0.7625
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043144 [exp]	24.3	0.7754
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10023711 [exp]	32.2	0.7319
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10038415 [exp]	34.0	0.7475
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10033007 [exp]	35.3	0.7459
					Lus10022643 [exp]	37.9	0.7567
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	42.9	0.7569
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	73.0	0.7322
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029183 [exp]	78.9	0.7003
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025522 [exp]	79.9	0.6379

Compare expression of checked genes

Lus10000263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.