Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 155 / 2e-42 Eukaryotic aspartyl protease family protein (.1) AT5G10760 134 / 5e-35 Eukaryotic aspartyl protease family protein (.1) AT1G79720 124 / 4e-31 Eukaryotic aspartyl protease family protein (.1) AT1G01300 111 / 1e-26 Eukaryotic aspartyl protease family protein (.1) AT2G03200 107 / 1e-25 Eukaryotic aspartyl protease family protein (.1) AT3G18490 100 / 1e-22 Eukaryotic aspartyl protease family protein (.1) AT1G09750 99 / 2e-22 Eukaryotic aspartyl protease family protein (.1) AT3G61820 98 / 3e-22 Eukaryotic aspartyl protease family protein (.1) AT3G20015 94 / 1e-20 Eukaryotic aspartyl protease family protein (.1) AT1G25510 90 / 2e-19 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020099 [exp] 430 / 6e-150 AT5G10770 149 / 4e-40 Eukaryotic aspartyl protease family protein (.1) Lus10026905 [exp] 311 / 7e-107 AT5G10760 79 / 7e-18 Eukaryotic aspartyl protease family protein (.1) Lus10020100 [exp] 182 / 2e-53 AT5G10770 190 / 7e-56 Eukaryotic aspartyl protease family protein (.1) Lus10026906 [exp] 176 / 3e-51 AT5G10760 182 / 9e-53 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 148 / 5e-40 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 146 / 6e-39 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 130 / 3e-33 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 125 / 5e-32 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 123 / 6e-31 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232600 [exp] 158 / 1e-43 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.006G232500 [exp] 149 / 2e-40 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 149 / 3e-40 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 145 / 4e-39 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 145 / 5e-39 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 143 / 3e-38 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 142 / 8e-38 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 134 / 5e-35 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 130 / 1e-33 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 128 / 6e-33 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10000265 pacid=23146549 polypeptide=Lus10000265 locus=Lus10000265.g ID=Lus10000265.BGIv1.0 annot-version=v1.0 ATGGGCGCCAATGGTTTCTTCTTCCTCCTCCTCCTCCTAACCTTGATTTCTCTCTTCCACAATTTCCATGTCTGTCACTGTGCTCGCCACATAGTTGTTG TTGAACAAAAATCCTCCTACCCTTCTTCTTCCTTTTCCTCCCCACCACCACCACCACCCGCCTCCACTAGCTCCGTCCAACAATTACCCCTCCAAATCTC CAAGAGCGATGGAAACTACGTCGTCACTGTCGGATTGGGCACTCCAACCAAATATCTCAACTTAATGCTAGACACCGGCAGCGCCACAACTTGGGTTCAG TGCCGACAAGGAACCACCTACAATCCCAACTCATCTACCACCTCCTCAACCCCTTGCAGCACACTTCAATCCTGTACCTTCGAAATCAAATACCTCGACG GCAGCTATTCCAACGGCTACAAAGCCACAGACAAGTTCACCATCTCTAACCACCAATTCCCCAGTTTCGCCTTTGGCTGCGCCGCCGAAAAGCTCGATGA TGAATCCGCCAAAGTTGACGGCATTCTCGCCCTCGGCCCTCCCTCCGCCAAGGAAGACGTTCCACCCCTCCTCTCCCAGACTGCACAAATCTACCGGACT ATATTCTGCTACTGCTTGCCTACCGCCGCGGGTAATTCCGGCTACCTTCTGTTTGGATCGCAGGCGATTCAGACCTGTCAAACTGAAAACACTAGATCCA CCACAATCGTCCCCAATACCACTAACCCGGCTATGTACTTCGTCAATCTCAACGGAATCACCATCGGAGACTTGGTGATCCCCGCTTCTTCTTTGTCGTC GGCGGCGATCGACTCGGGGACTGAAATCAGCCGGCTCCCGCAGGAGGTGTACGAAGGCGTGAAAGCAGAGTTCAAGAAATGGATGGCGAATTACACGGAA GTAGAGGGATCGGATATTTTGGACACTTGTTATGATATGGGCGGAGTGGAGATTAAGAATTTGAAAGTTCCGATTATGGTTCTGCATTTCGGGGATGAGT TGGATATGTATTTGAACGAGGGTAAGGTTGTTTGGCCGGACAAGGCCCGAAGCGGAGTTGCGTGTTTGGGGTTTGCTGCGGATAATGTCAGCATTATTGG GACTCATCAACACAGTGGCTGGAATCTGCTCTACAACAATGAACGCAACACTGTTGCATTCGGCCCCGGAAATTGCTGA
AA sequence Show only first row Show all	>Lus10000265 pacid=23146549 polypeptide=Lus10000265 locus=Lus10000265.g ID=Lus10000265.BGIv1.0 annot-version=v1.0 MGANGFFFLLLLLTLISLFHNFHVCHCARHIVVVEQKSSYPSSSFSSPPPPPPASTSSVQQLPLQISKSDGNYVVTVGLGTPTKYLNLMLDTGSATTWVQ CRQGTTYNPNSSTTSSTPCSTLQSCTFEIKYLDGSYSNGYKATDKFTISNHQFPSFAFGCAAEKLDDESAKVDGILALGPPSAKEDVPPLLSQTAQIYRT IFCYCLPTAAGNSGYLLFGSQAIQTCQTENTRSTTIVPNTTNPAMYFVNLNGITIGDLVIPASSLSSAAIDSGTEISRLPQEVYEGVKAEFKKWMANYTE VEGSDILDTCYDMGGVEIKNLKVPIMVLHFGDELDMYLNEGKVVWPDKARSGVACLGFAADNVSIIGTHQHSGWNLLYNNERNTVAFGPGNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	0	1
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	1.7	0.9594
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	2.0	0.9492
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	4.5	0.9227
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10014910 [exp]	5.5	0.9209
					Lus10041664 [exp]	5.5	0.9215
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	6.0	0.9254
AT3G45230			hydroxyproline-rich glycoprote...		Lus10021479 [exp]	6.7	0.8875
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	7.7	0.8701
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10027580 [exp]	8.5	0.8959
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10016635 [exp]	9.5	0.8845

Compare expression of checked genes

Lus10000265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.