Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03550 2535 / 0 ATGSL5, PMR4, GSL5, ATGSL05 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) AT4G04970 2294 / 0 ATGSL01, ATGSL1 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) AT2G13680 1453 / 0 GLS2, ATGSL02, CALS5 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) AT5G13000 1424 / 0 CALS3, ATGSL12 callose synthase 3, glucan synthase-like 12 (.1.2) AT1G05570 1424 / 0 ATGSL6, ATGSL06, GSL6, CALS1 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) AT2G31960 1416 / 0 ATGSL3, ATGSL03 glucan synthase-like 3 (.1.2) AT3G14570 1375 / 0 ATGSL4, ATGSL04 glucan synthase-like 4 (.1.2) AT3G59100 1366 / 0 ATGSL11 glucan synthase-like 11 (.1) AT1G06490 1362 / 0 CalS7, ATGSL7, ATGSL07 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) AT2G36850 1350 / 0 CHOR, ATGSL8, ATGSL08 CHORUS, glucan synthase-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039828 [exp] 3270 / 0 AT4G03550 2762 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10031648 [exp] 2930 / 0 AT4G03550 2827 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10033689 [exp] 2922 / 0 AT4G03550 2828 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10030030 [exp] 2266 / 0 AT4G03550 2251 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Lus10003920 [exp] 1420 / 0 AT1G05570 3231 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10039199 [exp] 1410 / 0 AT5G13000 3524 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Lus10020893 [exp] 1367 / 0 AT2G13680 3037 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10037469 [exp] 1357 / 0 AT1G05570 3143 / 0.0 GLUCAN SYNTHASE-LIKE 6, callose synthase 1 (.1.2) Lus10032463 [exp] 1347 / 0 AT3G07160 3063 / 0.0 glucan synthase-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131300 [exp] 2768 / 0 AT4G03550 2752 / 0.0 POWDERY MILDEW RESISTANT 4, glucan synthase-like 5 (.1) Potri.011G052400 [exp] 2403 / 0 AT4G04970 2583 / 0.0 GLUCAN SYNTHASE LIKE-1, GLUCAN SYNTHASE LIKE 1, glucan synthase-like 1 (.1) Potri.005G058300 [exp] 1472 / 0 AT2G13680 3190 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Potri.001G230000 [exp] 1442 / 0 AT5G13000 3157 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.003G214200 [exp] 1429 / 0 AT5G13000 3363 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.001G012200 [exp] 1427 / 0 AT5G13000 3492 / 0.0 callose synthase 3, glucan synthase-like 12 (.1.2) Potri.005G203500 [exp] 1380 / 0 AT1G06490 2914 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.002G058700 [exp] 1372 / 0 AT1G06490 2961 / 0.0 callose synthase 7, Arabidopsis thaliana glucan synthase-like 7, glucan synthase-like 7 (.1) Potri.015G089300 [exp] 1365 / 0 AT2G36850 3066 / 0.0 CHORUS, glucan synthase-like 8 (.1) Potri.001G011900 [exp] 1357 / 0 AT3G07160 2981 / 0.0 glucan synthase-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02364 [flax] [poplar] Glucan_synthase 1,3-beta-glucan synthase component
Representative CDS sequence Show only first row Show all	>Lus10000266 pacid=23161335 polypeptide=Lus10000266 locus=Lus10000266.g ID=Lus10000266.BGIv1.0 annot-version=v1.0 ATGCGGCTGATTCCGCCGCCGGAGAACGTAGACACTCTCGACCATGGTGTTTTGAGGCGTTTCCGCCGCAAGCTGCTGAAGAACTACACCGGATGGTGCT CTTACCTGAACAAGAAATCCAACATCTGGATCTCGGATCGGTCCAACCCGGACCTGCGTCGAGAGCTGCTGTACGTTTCTCTATACCTTCTAATTTGGGG CGAGGCTGCGAATTTACGGTTTATGCCTGAATGCATTTGTTTCATTTTCCATAATATGGCTATGGAGCTGAACAAGGTTTTGGAAGACTATATCGATGAG AACACTGGACAGCCTGTGATGCCTTCGTTCACCGGCGAGAACGCCTTTCTGAACTCAGTCGTTAAGCCGATATATGAAACTGTGAAGGCTGAGGTCGAGA GTAGTAAGAATGGGACAGCTCCTCACACTTCGTGGAGGAACTACGATGATCTTAACGAGTATTTCTGGAGTAAGAGGTGTTTTGATAAGCTGAAATGGCC GATTGATCTAGGTAGTAATTTCTTTGCGATTTCGAGTAAGCAGCAGAAGAAGAAGCATGTAGGGAAGACAGGATTCGTAGAGCAGAGATCGTTCTTGAAT CTGTTTCGGAGTTTCGACAGGCTGTTTGTGATGTTGATCTTGTTCCTACACGCTGCCATTGTTGTAGCGTGGGAGGAAAAGGATTATCCATGGCAGGCAT TGGAGAATAAGGATGTTCAGGTTAGAGCTTTGAGTATTTTCTTCACATGGGCTGGATTGAGGCTTTTACAGTCCTTGCTCGATATTGCGACACAGTATAG GCTGGTTTCGAGAGAGACAATGTGGCTAGGGGTAAGAATGGTGATGAAGAGTGTTGTTGCTTCCGGATGGATTCTTGTCTTTGGAGTTTTCTATGGAAGG ATTTGGAGCCACAGGAATCATGATAGGAGATGGTCCGGTGAAGCTAACGTTAGAGTGTTGACTTTTCTCGAAGTGGCAGGAGTTTTTGTGTTGCCTGAGT TATTAGCACTCGCCTTGTTCATCATCCCCTGGATTAGGAACTTCCTTGAGAATACGAATTGGAGAATCTTTTATTTTCTAACATGGTGGTTTCAGAGTAG GAGTTTTGTTGGCCGTGGACTTAGAGAAGGACTCATGGATAACATAAGGTACACTTTGTTCTGGATTCTGGTGTTGGCTACGAAATTTAGTTTCAGTTAC TTTCTACAGATTAAACCCATGATTAGGCCGTCAAGGATGATGTTGGATTTGAAGGATGTGAAGTATGAATGGCATGAGTATTTTGATAACAGCAATAGGC TTGCAGTTGGACTGTTATGGCTTCCCGTGGTGTTAATCTACTTGATGGACTTGCAAATATGGTATTCTATCTATTCATCTTTCGTAGGTGCGGCAGTGGG GTTGTTTGCTCATTTGGGTGAGATTCGGAATATCCCGCAGTTGAAGTTAAGGTTCCAGTTCTTCGCCAGTGCAATCCAGTTCAACTTAATGCCTGTAGAG CAGCTACTGAACGATAGGGGAACATTGAAGAGCAAGTTTAAAGATTCGATTCATCGGTTAAAGCTGAGATACGGGTTTGGGACACCTTATAAGAAGTTGG AATCTAATCAAGTTGAGGCTCACAAGTTTGCCTTGGTATGGAATGAGATTATCATGATTTTTAGGGAAGAGGATATAATCTCTGATCAGGAGATTGAGTT GCTGGAGCTGCCACGTAATTCCTGGAACGTGAGTGTTATTCGCTGGCCGTGTTTTCTTCTGTGTAATGAGTTGTTGCTTGCTCTTAGCCAAGCTAAAGAG CTGGTGGATGCTCCTGACAAGTGGCTATGGTACAAGATAAGCAAGACTGAATTCAGGAGATGTGCAGTTATCGAAGCTTACGACAGTTTAAAGCACTTGT TGCTCGAGATCGTGAAAGGTAACACGGAAGAGCATTCGATCGTTACTGTTCTGTTTCAAGAGATTGATCACTCGTTGCAGATTGAAAAGTTCACCAAGAC TTTCAGCATGACTGCACTGCCTAGCTTCCATACTAAGTTGATAAAACTCCTCGATCTGTTGAAAAAACCGACCAATGATTCGAATCAGGTTGTGAATATA ATCAATACATTGCAGGCTCTCTACGAAATCTCTGTACGAGACTTTTTCAGAGAGAAACGAACTATTGAGCTACTGAAGGAGGATGGTTTAGTTCCTCGTG ATCCTGCTTCCATATCTGGCCATCTCTTTGAGAATGCGGTTGAACTTCCAGATCATACCGATGAGAATTTCTATAGGAATGTTAGACGTTTGCATACGAT TCTTACATCTCGAGATTCGATGCACACTGTTCCGAAGAATCTAGAGGCCAGGCGGAGAATCGCATTCTTCAGTAACTCTCTGTTCATGAACATGCCACAT GCACCCCAAGTTGAGAAGATGATGGCTTTTAGTGTGCTGACTCCATACTACAGCGAGGAAGTAGTGTACGGACGAGAACAGCTTCGAGCGGAGAACGAGG ATGGAGTTTCGACTTTGTACTACTTGCAGACAATTTACGACGATGAGTGGAGAAATTTCTTGGAGAGGATGAAGCGAGAAGGAATGGAGAAAGATAATGA GATATGGACGAGTAAGTTGAGGGATCTTAGGCTTTGGGCTTCTTACAGAGGACAAACACTTTCTCGTACTGTCAGAGGTATGATGTACTACTATCGCGCA CTGAAGATGCTCGCTTTCCTCGATTCTGCTTCAGAGATCGACATTAGAGAAGGTGCTAGGGAACTTCATCCAATGGGGCGAGAGGCTGGCCAAGATGGAT TGAGCAGAAGTAGCAGTTCAATGAGTTTGCTGTTTAAAGGCCATGAGCATGGGACAGCTATGATGAAATTTACGTATGTGGTTGCTTGTCAAATATACGG TACTCAGAAGGCAAAGAAGGATCCTAATGCAGAGGAAATACTCTACTTGATGAAAAATAATGATGCTCTACGTGTAGCCTACGTTGACGAAGTCAACGCA GGAAGAGATATGAAGGATTATTATTCTGTTTTGGTCAAATATGATGCTGCGCTGGACAGAGAAGTGGAAATCTATAGAGTGAAGCTACCTGGCCCGATTA AGCTCGGAGAAGGAAAGCCAGAGAATCAGAATCATGCTTTGATTTTCACCCGTGGCGATGCGGTCCAAACCATTGATATGAATCAGGATAATTACTTCGA AGAGGCTCTGAAAATGCGGAATCTTTTGCAGGAATATAGGCAGTATTATGGAATCCGGAAGCCGACCATATTGGGAGTCAGGGAACATATTTTTACCGGT TCGGTATCGTCGCTGGCGTGGTTCATGTCTGCTCAAGAGACGAGTTTTGTTACTTTGGGACAGAGAGTATTGGCGAATCCTTTGAAGGTTAGAATGCACT ATGGCCACCCGGATGTCTTTGACAGATTCTGGTTTTTCACACGTGGCGGGCTCAGTAAGGCTTCGAGGGTGATTAATATCAGTGAGGATATTTTTGCTGG GTTCAATTGTACGTTGCGAGGTGGGAATGTGACTCATCATGAGTATATCCAGGTTGGGAAGGGAAGAGATGTTGGTTTGAATCAAATATCGATGTTCGAA GCGAAGGTTGCCAGTGGAAACGGCGAGCAAGTTCTCAGCAGAGATGTATACAGGTTGGGACACCGACTGGATTTCTTCAGGATGCTCTCGTTCTTCTACA CTACAGTGGGATTCTTCTTCAACACGATGGTGGTAATCTTAACTGTTTATGCATTCTTATGGGGCCGGCTTTATCTGGCTCTTAGCGGCGTTGAAGCTTC AGCTTTAGCCAACAGTAGCAACAACAAAGCACTTGGCGCCATTTTGAACCAGCAGTTCATAATCCAGCTCGGTATCTTCACCGCCCTTCCAATGATCGTC GAAAACTCCCTCGAGCAAGGATTTCTTCAAGCTATTTGGGATTTCTTAACAATGCAGCTCCAGCTCTCATCCGTGTTCTACTCATTCTCCATGGGAACTC GCTCTCATTTCTTTGGCCGTACAATCCTCCACGGTGGCGCAAAGTATAGAGCAACTGGACGTGGCTTTGTCGTTCAACACAAGAGCTTTGCTGAGAATTA CAGACTCTACGCCCGTAGCCATTTCATCAAGGCGATTGAACTCGGTCTGATTCTCACAGTCTACGCATCACACAGTCCGGTTGCTAAGGATACATTCGTA TACATAGCTTTAACTATCTCCAGCTGGTTTCTGGTAGTTTCATGGATAATGGCTCCCTTTGTGTTCAATCCATCCGGGTTCGATTGGTTGAAGACAGTAT ACGATTTTGAGGATTTCATGAACTGGATTTGGTACAAAGGCGGAGTCTTTACAAAACCCGAACAGAGCTGGGAAAAATGGTGGTACGAGGAACAGGATCA TCTCAGAACAACTGGGCTTCTCGGGAAGTGTATGGAGATCGTTCTAGACCTCCGATTCTTCTTTTTCCAGTTCGGTATAGTCTACCAACTCGGTATCGCA GTGAAAAGCACTAGCATCACCGTCTACTTAATCTCATGGGTATATATCTTCGTTGTGGTAGCTATCTACGTACTGGTAGCGTATGCCCATTCAAAATACG CTGCTAAAGAACACATCTACTACCGTATGGTCCAGTTTCTCATAATTATTCTGGCAATACTTCTGATGATAGCGCTGCTGGAATTCACATCGTTCAGAAT TGGTGATTTCTTCACCAGTTTGATGGCATTCATCCCAACCGGATGGGGATTGCTTTTGATTGCTCAAGTGTTTCGGCCGTGGATTCAGTCCACTGTAATC TGGGAGCTCGTGGTTTCGGTTTCGAGGTTATATGATATAATGTTTGGAGTTATTGTGATGGCTCCCGTTGCTTTCTTGTCGTGGATGCCCGGGTTTCAAG CTATGCAGACAAGGACATTGTTTAATCAAGCCTTCAGTAGAGGTCTCAGGATCATGCAGATTGTCACTAGCAAGAAGTCTATGATCTGA
AA sequence Show only first row Show all	>Lus10000266 pacid=23161335 polypeptide=Lus10000266 locus=Lus10000266.g ID=Lus10000266.BGIv1.0 annot-version=v1.0 MRLIPPPENVDTLDHGVLRRFRRKLLKNYTGWCSYLNKKSNIWISDRSNPDLRRELLYVSLYLLIWGEAANLRFMPECICFIFHNMAMELNKVLEDYIDE NTGQPVMPSFTGENAFLNSVVKPIYETVKAEVESSKNGTAPHTSWRNYDDLNEYFWSKRCFDKLKWPIDLGSNFFAISSKQQKKKHVGKTGFVEQRSFLN LFRSFDRLFVMLILFLHAAIVVAWEEKDYPWQALENKDVQVRALSIFFTWAGLRLLQSLLDIATQYRLVSRETMWLGVRMVMKSVVASGWILVFGVFYGR IWSHRNHDRRWSGEANVRVLTFLEVAGVFVLPELLALALFIIPWIRNFLENTNWRIFYFLTWWFQSRSFVGRGLREGLMDNIRYTLFWILVLATKFSFSY FLQIKPMIRPSRMMLDLKDVKYEWHEYFDNSNRLAVGLLWLPVVLIYLMDLQIWYSIYSSFVGAAVGLFAHLGEIRNIPQLKLRFQFFASAIQFNLMPVE QLLNDRGTLKSKFKDSIHRLKLRYGFGTPYKKLESNQVEAHKFALVWNEIIMIFREEDIISDQEIELLELPRNSWNVSVIRWPCFLLCNELLLALSQAKE LVDAPDKWLWYKISKTEFRRCAVIEAYDSLKHLLLEIVKGNTEEHSIVTVLFQEIDHSLQIEKFTKTFSMTALPSFHTKLIKLLDLLKKPTNDSNQVVNI INTLQALYEISVRDFFREKRTIELLKEDGLVPRDPASISGHLFENAVELPDHTDENFYRNVRRLHTILTSRDSMHTVPKNLEARRRIAFFSNSLFMNMPH APQVEKMMAFSVLTPYYSEEVVYGREQLRAENEDGVSTLYYLQTIYDDEWRNFLERMKREGMEKDNEIWTSKLRDLRLWASYRGQTLSRTVRGMMYYYRA LKMLAFLDSASEIDIREGARELHPMGREAGQDGLSRSSSSMSLLFKGHEHGTAMMKFTYVVACQIYGTQKAKKDPNAEEILYLMKNNDALRVAYVDEVNA GRDMKDYYSVLVKYDAALDREVEIYRVKLPGPIKLGEGKPENQNHALIFTRGDAVQTIDMNQDNYFEEALKMRNLLQEYRQYYGIRKPTILGVREHIFTG SVSSLAWFMSAQETSFVTLGQRVLANPLKVRMHYGHPDVFDRFWFFTRGGLSKASRVINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQISMFE AKVASGNGEQVLSRDVYRLGHRLDFFRMLSFFYTTVGFFFNTMVVILTVYAFLWGRLYLALSGVEASALANSSNNKALGAILNQQFIIQLGIFTALPMIV ENSLEQGFLQAIWDFLTMQLQLSSVFYSFSMGTRSHFFGRTILHGGAKYRATGRGFVVQHKSFAENYRLYARSHFIKAIELGLILTVYASHSPVAKDTFV YIALTISSWFLVVSWIMAPFVFNPSGFDWLKTVYDFEDFMNWIWYKGGVFTKPEQSWEKWWYEEQDHLRTTGLLGKCMEIVLDLRFFFFQFGIVYQLGIA VKSTSITVYLISWVYIFVVVAIYVLVAYAHSKYAAKEHIYYRMVQFLIIILAILLMIALLEFTSFRIGDFFTSLMAFIPTGWGLLLIAQVFRPWIQSTVI WELVVSVSRLYDIMFGVIVMAPVAFLSWMPGFQAMQTRTLFNQAFSRGLRIMQIVTSKKSMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10000266 [exp]	0	1
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10039828 [exp]	1.0	0.9995
AT1G56310			Polynucleotidyl transferase, r...		Lus10031402 [exp]	2.4	0.8400
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	11.8	0.8338
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	18.6	0.8418
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	22.2	0.7955
AT1G20060			ATP binding microtubule motor ...		Lus10034537 [exp]	25.5	0.8289
AT5G07940			unknown protein		Lus10021621 [exp]	27.7	0.8325
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10038728 [exp]	32.0	0.8347
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	32.0	0.8288
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	36.1	0.8054

Compare expression of checked genes

Lus10000266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.