Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13770 527 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G16010 134 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 123 / 6e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 122 / 7e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 120 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 117 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G41170 114 / 1e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63080 114 / 3e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35130 112 / 1e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G63130 111 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035089 [exp] 1206 / 0 AT5G13770 525 / 1e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017684 [exp] 125 / 1e-29 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016009 [exp] 121 / 1e-28 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042768 [exp] 121 / 2e-28 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 121 / 2e-28 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 121 / 2e-28 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10001284 [exp] 120 / 7e-28 AT1G31840 645 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006850 [exp] 118 / 1e-27 AT1G51965 782 / 0.0 ABA Overly-Sensitive 5 (.1) Lus10014245 [exp] 118 / 1e-27 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G098700 [exp] 647 / 0 AT5G13770 584 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.008G142900 [exp] 612 / 0 AT5G13770 544 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 132 / 5e-32 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 127 / 1e-30 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050500 [exp] 125 / 3e-30 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 125 / 4e-30 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 125 / 4e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 125 / 5e-30 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 125 / 9e-30 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G038400 [exp] 124 / 9e-30 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000268 pacid=23175338 polypeptide=Lus10000268 locus=Lus10000268.g ID=Lus10000268.BGIv1.0 annot-version=v1.0 ATGGCAACAATTCCTTCATCTCCTGAATGGTCCCTGGTACCTTCTTCTTCTTACTCCACCACTTGCTTCGCCAAACCAAACAAGTTCCCTGCTTCCTTCA CACATCTCCCTTCTTACCGCCCCCCAAACTCCAATCACCACATCAAGGCTTATAGCATCTTCCCATCCGCTGCATTAGTCGAAGAAGACAACAAAAAAGA AGAAACCCCGCAGAAATTCCGCTTCAGATTCCAACGAGACAACTCACAGCCTTATCCTGCTTCAGATGCGGAGAATCTCAACGCTTTCCTCTCCGGGTTG CTTCAGGATCCGAGAACCGAACCTCTGGCTTACGAACATTACCAGAAAGTCAAGGAAGGAAAGCCCGGGTTCAAACCGGAGAAGTCCGTCGTCAAGCTTC TTCTCAGGTACTTGGCTCGTTCCAAGAACTGGGATGGTTTGATTCTGCTGCTTTCTGATGATCTTAGAAGGTACGGAAATGGTAGTTTGCCTGATGCTTA TACTTGTTCAAAACTTGTGGAGAGTTGCGTCCAAGCTAGGAAGTTCAAAGCTGCTGAACGCCTTTTGGGGATTTTCGTCCAATCCGAAAACCCTAAAATC TCTGTGCTGTCTTTTAACGCTGCGATGAAAGGTTATAACAAGTTACATATGTATAGTAGCACAATTCGAATATACAACAAGATGAAATCGTTAGGGATTG GTTTGAATTCCGGCTGTTATTATCAGTCAATGAAGGCATACCAGAAACTTGGTAAAGTGGAGAAAGTTATGGCATTGTTTCATGAGTGTGAAAGTGGAGA TCTAGACACAAAGGAGGAAGTGTTGAGTAAAATGTACAGGGTATTGTGTGAATCTCTGGCTAAAACCGGGCGAGCTTCGGAAGCAATTGGTTATTTGAGA GACATGCTGAGTAATAATAACGATGGAAGAAAGGTTGTGGATCATTCAGTGGTTTACTCTTCCTTGATATGCTCACTTGCAAACTCCGGTCAAGTGGCTG AATCCGAAATGCTGTTCAAGGAAGCGATTCAGAAGAATTTGTTGAGAGATCCGGAGGTGTTCTCGAAGTTAGTTTCGATGTATGTATCAAAAGGCCAAGT GGAGAAGACTTTGGATGTCGTAAAGGCAATGAGCTGCGATGCTAAGCTGAAAGTGTCGGATTGCATACTCTGCACCGTGGTGAGTGGTTTCGTGAAACGA AGAGGGTTTGGTGCCGCGGTTAAGGTCTACGAGGAGCTGATAAGCGAAGGGTACGAGCCAGGGCAAGTGACTTATGCCTCGGCTGTGAATGCCTACTACC GGATCGAGGAGTATTCCAAAGCAGAGAAGGTGTTCCTCGAGATGCAAGAAAAAGGGTTCGACAAATGTGTGGTGGCATACTCGACAATGATCACTATGTT TGGAAAGCTAGGGAGGGTGAGGGATGCAATGCGGATGTTAGGGGAGATGAAGCAGAGGAAGTGTGACCCGAACATTTGGGTGTACAATGCTTTGCTGGAT ATGCACGGGAAGGCGATGAATCTGAGGCAGGTGGAGAAGTTGTGGAAGGAGGTGGAAAGGAGGAGGCTGGCTCCTGATAAGGTGAGCTACACGAGCATTA TAAGCGCGTACAGCAAGGCGCAGAAGTTCGATGAGTGTGTGAAGTATTTCGAGGAGTATAGGATGAGGGCGGATGGTGGAAGGGGTGGTGTGGATATGAA GATGGCGGGGATTATGGTAGGGGTGTTTTCGAATATGAGCTTGATAGATGAGTTGGTGAAGCTGCTGAGGGATATGAAATCAGTAGGGACAGTGTTGGAT GGGAGGCTGTATAGAACTGCTTTGAATGCGCTGAGAGATGCTGGTATGGAATCTCAGTCCAGATGGTTGATGGATAGTTTTCAAGCTAATTGA
AA sequence Show only first row Show all	>Lus10000268 pacid=23175338 polypeptide=Lus10000268 locus=Lus10000268.g ID=Lus10000268.BGIv1.0 annot-version=v1.0 MATIPSSPEWSLVPSSSYSTTCFAKPNKFPASFTHLPSYRPPNSNHHIKAYSIFPSAALVEEDNKKEETPQKFRFRFQRDNSQPYPASDAENLNAFLSGL LQDPRTEPLAYEHYQKVKEGKPGFKPEKSVVKLLLRYLARSKNWDGLILLLSDDLRRYGNGSLPDAYTCSKLVESCVQARKFKAAERLLGIFVQSENPKI SVLSFNAAMKGYNKLHMYSSTIRIYNKMKSLGIGLNSGCYYQSMKAYQKLGKVEKVMALFHECESGDLDTKEEVLSKMYRVLCESLAKTGRASEAIGYLR DMLSNNNDGRKVVDHSVVYSSLICSLANSGQVAESEMLFKEAIQKNLLRDPEVFSKLVSMYVSKGQVEKTLDVVKAMSCDAKLKVSDCILCTVVSGFVKR RGFGAAVKVYEELISEGYEPGQVTYASAVNAYYRIEEYSKAEKVFLEMQEKGFDKCVVAYSTMITMFGKLGRVRDAMRMLGEMKQRKCDPNIWVYNALLD MHGKAMNLRQVEKLWKEVERRRLAPDKVSYTSIISAYSKAQKFDECVKYFEEYRMRADGGRGGVDMKMAGIMVGVFSNMSLIDELVKLLRDMKSVGTVLD GRLYRTALNALRDAGMESQSRWLMDSFQAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	0	1
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	1.4	0.9527
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	2.0	0.9426
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	4.5	0.9106
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10036288 [exp]	5.3	0.9074
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10020326 [exp]	6.0	0.9367
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	6.0	0.9200
AT5G08050			Protein of unknown function (D...		Lus10021151 [exp]	6.6	0.9093
AT3G25805			unknown protein		Lus10022435 [exp]	7.7	0.9315
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026238 [exp]	8.1	0.9216
AT2G46735			unknown protein		Lus10030208 [exp]	8.2	0.9045

Compare expression of checked genes

Lus10000268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.