Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26670 82 / 9e-19 Pectinacetylesterase family protein (.1.2) AT3G05910 79 / 6e-18 Pectinacetylesterase family protein (.1.2) AT1G57590 79 / 8e-18 Pectinacetylesterase family protein (.1) AT1G09550 77 / 7e-17 Pectinacetylesterase family protein (.1) AT2G46930 74 / 7e-16 Pectinacetylesterase family protein (.1) AT3G62060 70 / 2e-14 Pectinacetylesterase family protein (.1) AT5G23870 61 / 2e-11 Pectinacetylesterase family protein (.1.2.3) AT3G09410 60 / 5e-11 Pectinacetylesterase family protein (.1.3) AT3G09405 60 / 6e-11 Pectinacetylesterase family protein (.1) AT4G19420 59 / 2e-10 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 76 / 2e-16 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 74 / 5e-16 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 74 / 7e-16 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10010084 [exp] 73 / 2e-15 AT5G26670 491 / 9e-174 Pectinacetylesterase family protein (.1.2) Lus10039238 [exp] 63 / 4e-12 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10025347 [exp] 54 / 5e-09 AT3G09410 250 / 8e-81 Pectinacetylesterase family protein (.1.3) Lus10033304 [exp] 54 / 9e-09 AT4G19420 392 / 2e-134 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 53 / 1e-08 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10034766 [exp] 53 / 2e-08 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004400 [exp] 88 / 7e-21 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 86 / 5e-20 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 83 / 4e-19 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 73 / 1e-15 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.015G145400 [exp] 66 / 5e-13 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.012G142300 [exp] 64 / 2e-12 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.006G084900 [exp] 62 / 1e-11 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.004G234100 [exp] 56 / 2e-09 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 54 / 6e-09 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 51 / 4e-08 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10000269 pacid=23148774 polypeptide=Lus10000269 locus=Lus10000269.g ID=Lus10000269.BGIv1.0 annot-version=v1.0 ATGATGAGCAAGCAGCTTTTGTTGTTGATACTGTTGGTCCTGGTATCCGGTGCGGTGGTCATCGGGATGACTGCAGATGGATGGTTTCCAGAAGAAGCTG AGGAAACATTATTCTACACCAGTAGTAGTAATAGCGGTACTAGTAATGACTTCTTCTATTACGAATTTCTCAATAATACTAATCATGAATCGAGGGCCAA TTTTAGACATGCTTCTCCTCCATTGATGGTGGGTCTCACCCTCATCCCTGCAGCTGCGGAAACAAGAGCAGTTTGTTTGGATGGATCCTTGCCTGGCTAT CATTTGCACCGCGGATATGGTTCCGGAGCAAATAGTTGGCTCATCCAACTGGAGGTACGGCATCTGCATTCCTTATTCTACAATGATTTCTTGATGTTGT TGTTGTGCTTCTTAACGAAACTGCAAAATGATCCACCTGTGGATAAAAAGATCCTTGGAGTATATGGCCTTGTTGAGAAGTGA
AA sequence Show only first row Show all	>Lus10000269 pacid=23148774 polypeptide=Lus10000269 locus=Lus10000269.g ID=Lus10000269.BGIv1.0 annot-version=v1.0 MMSKQLLLLILLVLVSGAVVIGMTADGWFPEEAEETLFYTSSSNSGTSNDFFYYEFLNNTNHESRANFRHASPPLMVGLTLIPAAAETRAVCLDGSLPGY HLHRGYGSGANSWLIQLEVRHLHSLFYNDFLMLLLCFLTKLQNDPPVDKKILGVYGLVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	0	1
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	2.0	0.9130
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	2.8	0.9099
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	4.0	0.8972
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	7.0	0.8847
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	8.1	0.9011
AT2G38330			MATE efflux family protein (.1...		Lus10002856 [exp]	9.4	0.8712
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	9.7	0.8327
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	11.8	0.8512
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	12.2	0.8944
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	12.2	0.8951

Compare expression of checked genes

Lus10000269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.