Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26680 511 / 0 5'-3' exonuclease family protein (.1.2) AT1G29630 84 / 2e-17 5'-3' exonuclease family protein (.1.2.3) AT1G01880 83 / 3e-17 5'-3' exonuclease family protein (.1.2) AT3G28030 79 / 6e-16 UVR1, UVH3 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) AT1G18090 71 / 3e-13 5'-3' exonuclease family protein (.1.2) AT3G48900 54 / 7e-08 single-stranded DNA endonuclease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002782 [exp] 82 / 6e-17 AT1G29630 634 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10011991 [exp] 82 / 8e-17 AT1G29630 626 / 0.0 5'-3' exonuclease family protein (.1.2.3) Lus10027250 [exp] 80 / 4e-16 AT1G18090 495 / 1e-170 5'-3' exonuclease family protein (.1.2) Lus10039424 [exp] 78 / 2e-15 AT3G28030 548 / 8e-170 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Lus10004608 [exp] 76 / 4e-15 AT1G29630 481 / 6e-165 5'-3' exonuclease family protein (.1.2.3) Lus10041375 [exp] 77 / 5e-15 AT1G01880 660 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10036554 [exp] 75 / 2e-14 AT1G01880 624 / 0.0 5'-3' exonuclease family protein (.1.2) Lus10005744 [exp] 67 / 7e-12 AT3G48900 563 / 0.0 single-stranded DNA endonuclease family protein (.1.2) Lus10027451 [exp] 60 / 1e-09 AT3G48900 560 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000700 [exp] 522 / 0 AT5G26680 650 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.015G041400 [exp] 79 / 7e-16 AT1G18090 584 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.014G077300 [exp] 75 / 1e-14 AT1G01880 667 / 0.0 5'-3' exonuclease family protein (.1.2) Potri.011G077001 [exp] 75 / 2e-14 AT1G29630 750 / 0.0 5'-3' exonuclease family protein (.1.2.3) Potri.017G070500 [exp] 74 / 3e-14 AT3G28030 788 / 0.0 UV REPAIR DEFECTIVE 1, ULTRAVIOLET HYPERSENSITIVE 3, 5'-3' exonuclease family protein (.1) Potri.015G142800 [exp] 54 / 9e-08 AT3G48900 609 / 0.0 single-stranded DNA endonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0464 [flax] [poplar] 5_3_exonuc_C PF00867 [flax] [poplar] XPG_I XPG I-region CL0280 [flax] [poplar] PIN PF00752 [flax] [poplar] XPG_N XPG N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000270 pacid=23148773 polypeptide=Lus10000270 locus=Lus10000270.g ID=Lus10000270.BGIv1.0 annot-version=v1.0 ATGTTTACTCGAACTATTAGGCTACTTGAGGCTGGAATCAAACCCGTTTATGTATTTGACGGGAAACCTCCTGAATTGAAAAGCCAAGAGCTGGCAAAGC GTTATTCGAAAAGAGAAGATGCTACTGAGGATCTGAGAGAAGCTGTAGAGGCTGGCAACAAAGAGGACATTGAAAAATTCAGTAAACGTACTGTGAAGGT TACTAAGCAGCACAATGAAGACTGCAAGAAGTTGTTGAGACTCATGGGAGTTCCTGTAATTGAGGCTCCTTCCGAAGCAGAAGCTCAGTGTGCTGCACTC TGCAAATCAGGGAAGGTTTATGCTGTAGCTTCTGAAGACATGGATTCTTTAACTTTTGGAGCTTCCATATTTCTTCGCCATCTAATGGATCCCAGCTCCA GAAAAGTTCCTGTGATGGAATTTGAAGTCTCGAAGATCTTGGAAGAGCTGAATCTCAGCATGGATCAGTTCATTGATCTCTGTATCCTCTCCGGATGTGA TTATTGCGACAACATCCGTGGAATTGGAGGGCTGACTGCTTTAAAGCTCATCCGTCAGCATGGCTCAATAGAGGGTATAATTCAGAACATCAGCAAAGAA AGGTACCAAATAGCAGAGGACTGGCCGTATCAGGAAGCAAGACGGCTGTTTAAAGAGCCAAATGTTCTTACAGATGAAGAACAAGAGATCAAATGGGCCT CTCCGGATGAAGAAGGCTTGGTTACTTTCCTGGTGAATGAAAATGGCTTCAATGCTGACAGGGCAATAGAAAAAATTAAAGCAGCAAAGAACAAGTCCTC ACAGGGCAGATTGGAGTCGTTTTTCAAGCCTCTGGGCAATACAACCATTCCCACTAAACGGAAGGTAGTGTTTCATCGAGCAATTTTAGTTTGTTTTCTT ACGAGCTTCTTTCTTGTCTCTTTTCATAGGATAAGCATCATTCTTTGTTCTGCAAGACACGTTGAGTTTGGAAATGCTAATTGTACGCCCTACTTGTTGA TGCCTGTGCATTTGTGTTTGCATGGCTTTAAACTGGAGTGA
AA sequence Show only first row Show all	>Lus10000270 pacid=23148773 polypeptide=Lus10000270 locus=Lus10000270.g ID=Lus10000270.BGIv1.0 annot-version=v1.0 MFTRTIRLLEAGIKPVYVFDGKPPELKSQELAKRYSKREDATEDLREAVEAGNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVIEAPSEAEAQCAAL CKSGKVYAVASEDMDSLTFGASIFLRHLMDPSSRKVPVMEFEVSKILEELNLSMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIEGIIQNISKE RYQIAEDWPYQEARRLFKEPNVLTDEEQEIKWASPDEEGLVTFLVNENGFNADRAIEKIKAAKNKSSQGRLESFFKPLGNTTIPTKRKVVFHRAILVCFL TSFFLVSFHRISIILCSARHVEFGNANCTPYLLMPVHLCLHGFKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	0	1
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	2.2	0.8420
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10018871 [exp]	4.2	0.8453
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	4.5	0.8610
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	4.6	0.8396
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10028778 [exp]	4.7	0.8469
AT3G01580			Tetratricopeptide repeat (TPR)...		Lus10034497 [exp]	6.6	0.7940
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	7.7	0.8269
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	7.7	0.8099
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	8.1	0.8176
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10022391 [exp]	8.8	0.7995

Compare expression of checked genes

Lus10000270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.