Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28470 1023 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G13750 741 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 724 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G32810 724 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G20710 669 / 0 BGAL7 beta-galactosidase 7 (.1) AT3G52840 634 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 632 / 0 BGAL4 beta-galactosidase 4 (.1) AT4G26140 630 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 612 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G63810 610 / 0 BGAL10 beta-galactosidase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036108 [exp] 1015 / 0 AT2G28470 661 / 0.0 beta-galactosidase 8 (.1.2) Lus10006733 [exp] 758 / 0 AT2G28470 939 / 0.0 beta-galactosidase 8 (.1.2) Lus10011237 [exp] 752 / 0 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10000701 [exp] 743 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 737 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 735 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 717 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 717 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10016655 [exp] 711 / 0 AT2G32810 1290 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G012400 [exp] 1098 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 814 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.006G144500 [exp] 752 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 728 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 725 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 725 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 717 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 712 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 698 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.001G025701 [exp] 681 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10000271 pacid=23155586 polypeptide=Lus10000271 locus=Lus10000271.g ID=Lus10000271.BGIv1.0 annot-version=v1.0 ATGAAACGAAGTAGTGGAGGCCGGAGGAGAGAGATTGTGGTGGCGGTGGGGGTGCTTTTGGGGCTGGCGCTGGCTGTAGCAACGGCATTTGGAGCAAACG TGTCGTACGATCACAGGGCGTTGGTCATTGATGGCAAACGGCGGATGTTGATCTCTGGCTCTATTCATTACCCTCGAAGCACTCCTGACATGTGGCCGGA CCTTATACAGAAATCCAAGGATGGAGGAGTGGATGTGATCGAGACCTACGTTTTCTGGAACATACACGAGCCAGTTCAAAATCAGGCAATGGCAGAAGCC GGACTATACGTTCATCTCCGAATCGGTCCATATGTGTGCGCCGAGTGGAACTATGGTGGCTTTCCTCTCTGGCTGCATTTTATTCCCGGAATCAAGCTAC GAACTGACAACGAGCCGTATAAGACTGAAATGAAGCGATTCACGGCAAAGATTGTGGATATGATGAAGAAGGAAAAACTGTATGCGTCTCAAGGAGGACC AATCATATTATCGCAGATTGAGAATGAATATGGCAACGTTGATGCCGCTTATGGCTCTGCGGCTAAACCCTACATCAACTGGGCAGCAAACATGGCAGAG TCCCTCAACACTGGAGTGCCCTGGGTTATGTGCCAGCAAGGAGATGCTCCGGATCCCATTATCAACACTTGCAACGGATTCTACTGTGACCAATTCACTC CAAATTCTAAAAACAAACCCAAAATGTGGACTGAAAATTGGAGCGGATGGTTTCTTTCCTTTGGTGGTGCTGTGCCCTACAGACCTGTGGAAGACCTTGC ATTTTCTGTGGCACGCTTTTTCCATACCATGGTGGGACTAACTTTGGAAGGAGTTCCGGTGGACCCTTTATCGCCACTAGTTATGATTATGATGCCCCCC TTGACGAATATGGTAAGGCCTGTGGTTCTGCAATGGCGTTTCACAGACAAAGCCAATAGTCAAGCAATGAACTATTTTCGGGACCTCCATCTAACCCAGT ACGTCCACTTGTTCACATTGATCGCAGGACTCCTTAGACAACCTAAGTGGGGCCACCTAAAGGATCTGCATAAGGCTTTAAAACTTTCTCAAGATGCCCT GCTGGCAACTGACCCGGCTACAACTTCACTCGGTTCGACCGTTGAGGCAACTGCTTATAAATCGGGTTCTCTGTGTGCTGCCTTTCTTGCAAATACTGGT AAAACTGACAGGACTGTGAGTTTCTGGAACAATTCATATTTGTTGCCTGCATGGTCGGTCAGTATCTTACCAGACTGCAAGACTGTTGCGTTTAACACTG CAAAGATAAACACTGTGACTGTGGTTCCAAGCTTCACTCGTACATCTATCAATGATGTCTCCTCTGAGTGGAGCTGGATAGATGAACCTGTGGGTATCAC AAAGGACAGTGCATTCACGAAACCAGGACTTCAAGAGCAGATAAATACCACAGCTGATCAGAGTGACTACCTTTGGTACTCATTAAGCATTAATAGTGAA GGTGGGGATGGATCCCAAATTCACTTAGAATCTCTTGGCCATGCGATTCACACTTTTGTAAATGGGAAATTGGCTGGCACAGCAACAGGAGACAGCAACA ACGCTAAGATTTCACAGGACATTGCAGTCACACTTGTACCTGGGAAGAACACCATCGATCTCTTGAGTTTAACAGTGGGACTGCAGAACTATGGGGCCTT TTTTGACTTAAAAGGTGCTGGAGTTACTGGCCCAGTAGTGTTGAAGCTGAAAAATGGTTCCACCATTGATGTCTCTGCACAGATGTGGACTTATCAGATT GGCCTCAAAGGTGAGGATTCGGGACTGCCTAGTGGAACTTCTTCTCAGTGGGTTTCACAGTCGTCTTTGCCTACAATGAAACCTCTATTATGGTACAAGG GAGAGGCTTGGGTGAATGGACAAAGCATTGGACGATATTGGCCGACTAATATAGCACCCCCTAGTGGTTGCACTGATTCTTGTGATTACAGAGGATCTTA TGGTGCAAACAAATGCCTCAAGAACTGTGGAAAGCCTTCTCAGACATTATACCACGTACCCCGCTCTTGGCTGAAATCAAGCGGAAACACTCTGGTATTA TTCGAAGAAAATGGCGGGGACCCGACCAAGATAGCATTTGCTGCTGCAACGAACAAAGTTGGAAGTGTTTGTGCTCAGGTATCAGAGACACATCCATCTC CAGTAGACAACTGGAGACTAAATTCGGATACAGAAACTGAATCGGGACCAGTGCTATCACTATTTTGCTCACATCCCAACCAAGTGATTTCTTCAATCAA GTTTGCAAGCTATGGTACCCCTCAAGGAACCTGTGGGAGCTTCAGAAATGGAGATTGCCACAGCAAGAATACTCTATCCATTATAGAAAAGGCTTGCATT GGATCAAAGAGCTGTAGCGTTGAAGTATCAGGGGGCACATTTGGTGAACCTTGTGGCCGAGTTCGTAAGAGTTTGGCAGTGGAAGCATCCTGTACTGCTG CTGCACATTGA
AA sequence Show only first row Show all	>Lus10000271 pacid=23155586 polypeptide=Lus10000271 locus=Lus10000271.g ID=Lus10000271.BGIv1.0 annot-version=v1.0 MKRSSGGRRREIVVAVGVLLGLALAVATAFGANVSYDHRALVIDGKRRMLISGSIHYPRSTPDMWPDLIQKSKDGGVDVIETYVFWNIHEPVQNQAMAEA GLYVHLRIGPYVCAEWNYGGFPLWLHFIPGIKLRTDNEPYKTEMKRFTAKIVDMMKKEKLYASQGGPIILSQIENEYGNVDAAYGSAAKPYINWAANMAE SLNTGVPWVMCQQGDAPDPIINTCNGFYCDQFTPNSKNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFSVARFFHTMVGLTLEGVPVDPLSPLVMIMMPP LTNMVRPVVLQWRFTDKANSQAMNYFRDLHLTQYVHLFTLIAGLLRQPKWGHLKDLHKALKLSQDALLATDPATTSLGSTVEATAYKSGSLCAAFLANTG KTDRTVSFWNNSYLLPAWSVSILPDCKTVAFNTAKINTVTVVPSFTRTSINDVSSEWSWIDEPVGITKDSAFTKPGLQEQINTTADQSDYLWYSLSINSE GGDGSQIHLESLGHAIHTFVNGKLAGTATGDSNNAKISQDIAVTLVPGKNTIDLLSLTVGLQNYGAFFDLKGAGVTGPVVLKLKNGSTIDVSAQMWTYQI GLKGEDSGLPSGTSSQWVSQSSLPTMKPLLWYKGEAWVNGQSIGRYWPTNIAPPSGCTDSCDYRGSYGANKCLKNCGKPSQTLYHVPRSWLKSSGNTLVL FEENGGDPTKIAFAAATNKVGSVCAQVSETHPSPVDNWRLNSDTETESGPVLSLFCSHPNQVISSIKFASYGTPQGTCGSFRNGDCHSKNTLSIIEKACI GSKSCSVEVSGGTFGEPCGRVRKSLAVEASCTAAAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10000271 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036108 [exp]	1.4	0.9072
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10036109 [exp]	2.0	0.8474
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10013704 [exp]	8.8	0.6821
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	9.7	0.7008
AT2G35470			unknown protein		Lus10030980 [exp]	11.7	0.6807
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	20.4	0.6532
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	22.3	0.7116
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10016098 [exp]	24.1	0.6410
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	24.2	0.7195
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	28.1	0.6586

Compare expression of checked genes

Lus10000271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.