Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64070 623 / 0 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 587 / 0 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002098 [exp] 826 / 0 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10000833 [exp] 358 / 4e-111 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059000 [exp] 746 / 0 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.007G109000 [exp] 717 / 0 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000272 pacid=23144209 polypeptide=Lus10000272 locus=Lus10000272.g ID=Lus10000272.BGIv1.0 annot-version=v1.0 ATGGCAAACAAGCAAATTAACGATGAAATGGGCAAAAATAAAAATTCGAGCCCCAGTAGTAAAAATCAGGTTCTGAATAAACTATTGTCATCGAAGCAGA AGTTCTTATCATTAACTTCCTCACCACCCGCACAAAGATCTGTTTCATTTTCAACTTCCCCAGGTAATAATTTGCATGATGATGGCGGTCAATGTTCACC CGAGGAAAATAAAAATTTTAAGAAGTTCATCCCTGGTCCAAAGGTCAGAGATGCGTTACTTTTTAGAAAATCCGTGGATAAAGATGAGGAAGATCCCGAG AAGGATGGATTTCTTAAGAGGCTAATGAGGGAAAACAGTAAAAAAGAGGAGGAGGAGTTGACGTCGAGCTCTGATGGCTTCTTCAAGAGGCTTTTGAGAG ATTCAAATAGATCTGAAGATGATGAGGTGACATCTAGTTCAGATGGTTTTTTCAAGAGACTCTTGAAAGATTCTGGGAAAGGGGAAGAGGATGAGCTGAC TTCACCAACAGATGGTTTTTTTAAGAAGCTTTTGAAGGATCATAACAAAGGTGAAGAGGAGGAGTTGACCGCAAGTTCAGAAGGATTTTTCAAAAAGTTG TTTCGTGATAGTAAAGGTGACGGAGATGACAGATTACTTTCTAAATCAATTGAAGATGTTGAAAGGGATGGGTTTTTCAGGAAGTTCTTCAAAGAGAAGT TTGATGACAAGAAAGATGGGAATGAAAGACTTGAGGATGGAAGGATTAATGCTTCTGAGAAATTTGCAAAATCTGTAGAGGATGATGAAAAGGATGGATT CTTCCGTAAATTGTTTAAGGATAAGTCTGAGAAGTATGGTCCTGATAAGATCAATGAAGTGAATGCCAATGGCGAGGAAGAAGAATCTTCTGATTTATCT CTGTTCAGAAAACTATTTCGTGTGAACACCGAACGTGTGCACCCTGAAGATGTAAAAAGTACGCTGGCAAATGAAAGTAATAACAATGCACATGTTAGTT TGTCTGAAAGCAGCCCAGGGACAGAGAAATTTTTCCGCAAACTGTTCAGAGACCGGGACCGTTCAGTTGAAGATTCCGAATTATTGAGTGCCAAGAAGAA CAAGGAGAAGCGCCCTGGGTCACCAAAGCAACATAATGATAAGTCAAACGCAAAACCACCACTCCCGAATCACTCTGCAGCACAATTGAGGAAAGGAGCT TATCATGAATCCTTGGATTTTGTATTATCGCTATGTGAAACTTCCTACTTTTTAGTGGATGTATTTCCTGTTGAAGATCGCAAAAGTGCCCTTCGAGAGT CACTTACAGAGATCAATCTGCATTTAGCTGAGGCTCAGCCTACTGGAGGAGTGTGCTTTCCTCTGGGAAAGGGGATGTACCGTGTGGTTCATATACCTGA AGACGAGGCTGTTCTACTGAACTCCAGGGAAAAGGCACCTTACCTGATCTGCGTGGAAGTTCTGAAAAGTGAAATGCCAAGCAATTCCAAAGATTCCTCT GGCTCTCAAAAGCTTTCTAGAGGAGGAATTCCTCTTGCAAATGGAGATGCATTGTTGCAAAAGCCACCTCCATGGGCATATCCGTTATGGACTACACAGG AAGCATACCGGAACAGTAGTGATAGAATGTCAAGATCCACAGCTGAAGCCATTGATCAGGCAATGTCCCATTCTTCGGAAGCAAAGTTAAAGGTTGTCAC TGTGAGTCTTTCTGTGGAGAGGCGGACAATAGACTCAAGACTAAAAAGTGAAGCACCTGATTTACACTCTGGCATCCATCGCAGTAATTTGCGGAAAAAG GCAGCAGATGGCTGTGATTTTGAATGGGTAAGGGTCGTGCTGACATCAGATTCTGGAGCTAGAATGGAAGATATTGGGGATGAAGGGCCACCACGTAGAA GGGAGCATCGTCGTGTTCCAAGCACCATTGCAATAGAAGAAGTAAAGGCTGCAGCAGCCAAGGGTGAAGCACCTCCCGGACTTCCTCTGAAAGGAGCCGG ACAAGATTCATCAGATGCCCAACCAAGTGTAAGAACTCTCAGGCTAAAAGACTATATGCCTGTTTGCAACCAATTGTTGATTTAG
AA sequence Show only first row Show all	>Lus10000272 pacid=23144209 polypeptide=Lus10000272 locus=Lus10000272.g ID=Lus10000272.BGIv1.0 annot-version=v1.0 MANKQINDEMGKNKNSSPSSKNQVLNKLLSSKQKFLSLTSSPPAQRSVSFSTSPGNNLHDDGGQCSPEENKNFKKFIPGPKVRDALLFRKSVDKDEEDPE KDGFLKRLMRENSKKEEEELTSSSDGFFKRLLRDSNRSEDDEVTSSSDGFFKRLLKDSGKGEEDELTSPTDGFFKKLLKDHNKGEEEELTASSEGFFKKL FRDSKGDGDDRLLSKSIEDVERDGFFRKFFKEKFDDKKDGNERLEDGRINASEKFAKSVEDDEKDGFFRKLFKDKSEKYGPDKINEVNANGEEEESSDLS LFRKLFRVNTERVHPEDVKSTLANESNNNAHVSLSESSPGTEKFFRKLFRDRDRSVEDSELLSAKKNKEKRPGSPKQHNDKSNAKPPLPNHSAAQLRKGA YHESLDFVLSLCETSYFLVDVFPVEDRKSALRESLTEINLHLAEAQPTGGVCFPLGKGMYRVVHIPEDEAVLLNSREKAPYLICVEVLKSEMPSNSKDSS GSQKLSRGGIPLANGDALLQKPPPWAYPLWTTQEAYRNSSDRMSRSTAEAIDQAMSHSSEAKLKVVTVSLSVERRTIDSRLKSEAPDLHSGIHRSNLRKK AADGCDFEWVRVVLTSDSGARMEDIGDEGPPRRREHRRVPSTIAIEEVKAAAAKGEAPPGLPLKGAGQDSSDAQPSVRTLRLKDYMPVCNQLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	0	1
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	1.0	0.9003
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	3.2	0.8852
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	3.5	0.8769
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	6.5	0.8485
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	6.6	0.8549
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	7.9	0.8476
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	9.9	0.8315
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	10.0	0.8422
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	10.7	0.8186
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	11.5	0.8128

Compare expression of checked genes

Lus10000272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.