Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47530 554 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 379 / 1e-126 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 373 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 367 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G66520 367 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 360 / 3e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 361 / 1e-118 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 361 / 1e-118 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 357 / 1e-118 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31920 351 / 2e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024971 [exp] 370 / 2e-123 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 366 / 6e-122 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 360 / 1e-117 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 353 / 3e-116 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 350 / 5e-116 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 350 / 9e-116 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 352 / 5e-115 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 354 / 1e-114 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10010909 [exp] 348 / 1e-114 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074500 [exp] 595 / 0 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 404 / 4e-135 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 395 / 3e-133 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 386 / 1e-131 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G001000 [exp] 376 / 7e-126 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G040100 [exp] 379 / 1e-125 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 372 / 8e-125 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 371 / 6e-124 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 367 / 2e-122 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 367 / 2e-122 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000274 pacid=23178825 polypeptide=Lus10000274 locus=Lus10000274.g ID=Lus10000274.BGIv1.0 annot-version=v1.0 ATGATACGAGGCGAGTCCGGATGTAAACCGGATGATGTTACTTGCTTACTTCTCCTTCAAGCATGTGCTGAACTGGGTGCATTGGAATTTGGGAAAAAGG TTCGAATTTACATTCAGGAAAACGGCTATGGTGACACTCTCAAGTTATGTAATTCACTTATTGCGATGTATTCTAGGTGTGGATGCGTTGACGAAGCATA TGGAGTGTTTAAGAGTACAAGGAACAAAAATGTGGTTACATGGAGCGCTATGATTTCAGGTTTGGCAATGAATGGACACGGAAGAGAGGCCATTGATGCA TTCGGAGAAATGGAAAAAGCGGGTATTCAGCCAGATGATCAGACTTTTACCGGACTTTTATCGGCTTGTAGTCACTGCGGGTTGTTAGACGAGGGCATGG TGTTCTTCCATAGAATGAGTAGTAGAGAGTTTGGGATTCAGCCAAACATTCATCACTATGGATGCATGGTCGATCTGATGGGCCGCGTGGGGAAGCTCGA CCAAGCATACGAGCTGATAATGTCAATGAAACCAGTGAAGCCCGATTCGGCAATATGGAGGACTCTACTTGCAGCTTGTAGAATCCATCGCCATGTCACG CTGGGAGAACGAGTGGTGGAGCATTTGGTGGAGCTCAAGGCTCAGGAAGCCGGGGACTATATGCTGTTGTTGAACATGTATTCTTCAGTTGGGGATTGGG ATAAAGTAGCTGAGACGAGGAAGTTTATGCAGGAAAGGGGGATTCAAACCACACCGGGTTGCAGTTCGATCATCTTGAAAGGTGAAGTGCATGAGTTCGT TGCGGACGATGTCTCTCACCCGAGGAAACAAGCAATCTACGAAACTCTCGGTGAGATCAACGAGCAGCTGAAGATTGCTGGCTATGTTACTGAAATAACA TCAGAACTTCACAACCTGGGTGAGGAAGAAAAGGGCCATGTGCTTTCTTATCACAGCGAAAAGTTAGCATTGGCATTTGGGATTCTTGAAACTCCACCTG GAACGACAATAAGGATAGCTAAGAACCTGAGGACCTGTTCTGACTGCCATAATTTTGCAAAGGCTGCTTCCTGGGTGTACAATAGAGAGGTAGTCATAAG AGATCGCAACCGATTTCATCATTTTCGTGAAGGGCGTTGTTCCTGCAATGACTTCTGGTAG
AA sequence Show only first row Show all	>Lus10000274 pacid=23178825 polypeptide=Lus10000274 locus=Lus10000274.g ID=Lus10000274.BGIv1.0 annot-version=v1.0 MIRGESGCKPDDVTCLLLLQACAELGALEFGKKVRIYIQENGYGDTLKLCNSLIAMYSRCGCVDEAYGVFKSTRNKNVVTWSAMISGLAMNGHGREAIDA FGEMEKAGIQPDDQTFTGLLSACSHCGLLDEGMVFFHRMSSREFGIQPNIHHYGCMVDLMGRVGKLDQAYELIMSMKPVKPDSAIWRTLLAACRIHRHVT LGERVVEHLVELKAQEAGDYMLLLNMYSSVGDWDKVAETRKFMQERGIQTTPGCSSIILKGEVHEFVADDVSHPRKQAIYETLGEINEQLKIAGYVTEIT SELHNLGEEEKGHVLSYHSEKLALAFGILETPPGTTIRIAKNLRTCSDCHNFAKAASWVYNREVVIRDRNRFHHFREGRCSCNDFW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47530			Pentatricopeptide repeat (PPR)...		Lus10000274 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	1.7	0.7821
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	3.6	0.7290
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10017243 [exp]	5.7	0.7754
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	15.0	0.7410
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	17.3	0.7088
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	19.5	0.7383
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	19.6	0.7634
AT3G49080			Ribosomal protein S5 domain 2-...		Lus10038852 [exp]	21.0	0.7057
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10029401 [exp]	22.4	0.7614
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	22.8	0.7026

Compare expression of checked genes

Lus10000274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.