Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47520 543 / 0 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT2G22780 398 / 5e-138 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT1G53240 397 / 7e-138 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 394 / 2e-136 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT5G09660 379 / 7e-131 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G53910 85 / 5e-20 malate dehydrogenase-related (.1) AT4G17260 50 / 1e-06 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021666 [exp] 768 / 0 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 651 / 0 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 636 / 0 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 407 / 9e-142 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 397 / 2e-137 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10039642 [exp] 389 / 3e-134 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 365 / 9e-125 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 369 / 2e-124 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10013680 [exp] 360 / 2e-123 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102000 [exp] 623 / 0 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 615 / 0 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 615 / 0 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.011G096300 [exp] 414 / 1e-144 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 407 / 1e-141 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.007G009100 [exp] 403 / 8e-140 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.004G054200 [exp] 401 / 4e-139 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 393 / 7e-136 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 387 / 1e-133 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G152000 [exp] 244 / 5e-79 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000275 pacid=23178824 polypeptide=Lus10000275 locus=Lus10000275.g ID=Lus10000275.BGIv1.0 annot-version=v1.0 ATGGCAGCAACATCAGCAGCTACCACCTTTGCTATCGGATCAACTATTTCCCTTGGCCCTAAAGCCAGCCAAATTCGACAGCGACAACCATCAGCTTTGG GGTTCAATTCTCATAAATCACTTGATCTGAAGACAACTAGCTTGGCGTTGCAGTCTTCTTTTCTGGACAAGAAAAGTTATACTGCTCTGCAGAGCACCTC TTTACAAAAGCCCAGGGCCGTAAATGGAAGGTCGCAATATCGCCTTAATGCCCAGGCATCTTACAAAGTGGCTGTTCTTGGAGCAGCTGGAGGGATAGGT CAGCCTCTTTCGCTGCTGGTAAAGATGTCTCCATTGGTTTCTACCCTCAACCTGTACGATATCGCAAACGTAAAGGGTGTTGCTGCTGACCTCAGTCATT GCAACACGCCGGCACAAGTTTTCGATTTCACTGGTGCTTCTGAGTTGGGCGATTGCTTGAAAGGTGTGGATGTTGTTGTCATTCCTGCCGGAGTTCCAAG AAAGCCCGGCATGACCCGTGATGATCTCTTTAACATCAACGCCAGCATTGTAAAGACCTTGGTCGAGGCTGTTGCTGACAACTGCCCCGGTGCTTTCATT CACATCATTAGCAACCCGGTCAACTCCACAGTGCCGATTGCTGCTGAAGTCTTGAAGCAGAAGGGTGTTTATGATCCGAAGAAGCTCTTTGGCGTCACTA CTCTGGATGTTGTGAGGGCAAACACATTTGTTGCTCAAAAGAAGAACCTCAGAGTGATTGATGTCGATGTCCCAGTTATCGGAGGCCATGCCGGGATTAC CATCCTTCCTCTTCTGTCCCAGGCCACTCCCACACTTGATTTCACCGACGAGGAGATCCATGAGCTGACTGTTAAAATTCAGAATGCCGGAACAGAAGTT GTCGAGGCAAAGGCAGGTGCTGGCTCCGCTACCCTGTCGATGGCTTACGCAGCAGCCAGATTTGTCGAATCTTCTCTTCGTGCACTTGCCGGAGATGCTG ATGTGTATGAGTGTGCGTATGTGCAATCGGATATTACTGACAATCCATTCTTCGCGTCGAGGATTAAGCTCGGAAAGAAGGGTGTCGAGTCTCACATTAA GTCGACACTTGATGGTATGACCACGTATGAAGAGAAGGCACTTGATGCTCTGGCCCCCGAACTAACGGCAAGCATCGAGAAAGGCATCAATTTCGCTCGT AAGCAGCCAGTGGCTGCATAG
AA sequence Show only first row Show all	>Lus10000275 pacid=23178824 polypeptide=Lus10000275 locus=Lus10000275.g ID=Lus10000275.BGIv1.0 annot-version=v1.0 MAATSAATTFAIGSTISLGPKASQIRQRQPSALGFNSHKSLDLKTTSLALQSSFLDKKSYTALQSTSLQKPRAVNGRSQYRLNAQASYKVAVLGAAGGIG QPLSLLVKMSPLVSTLNLYDIANVKGVAADLSHCNTPAQVFDFTGASELGDCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEAVADNCPGAFI HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRVIDVDVPVIGGHAGITILPLLSQATPTLDFTDEEIHELTVKIQNAGTEV VEAKAGAGSATLSMAYAAARFVESSLRALAGDADVYECAYVQSDITDNPFFASRIKLGKKGVESHIKSTLDGMTTYEEKALDALAPELTASIEKGINFAR KQPVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Lus10038812 [exp]	1.4	0.8863
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	3.5	0.8841
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	8.4	0.8518
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	8.5	0.8465
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10038226 [exp]	8.8	0.8786
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10017864 [exp]	9.2	0.8349
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	12.0	0.8696
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	13.2	0.8536
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	15.7	0.8119
AT5G63380			AMP-dependent synthetase and l...		Lus10032755 [exp]	16.8	0.8033

Compare expression of checked genes

Lus10000275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.