Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16350 469 / 4e-164 Aldolase-type TIM barrel family protein (.1) AT1G79470 462 / 3e-161 Aldolase-type TIM barrel family protein (.1) AT3G14150 43 / 0.0003 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001763 [exp] 604 / 0 AT1G54310 653 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036443 [exp] 114 / 6e-30 AT1G16350 113 / 1e-29 Aldolase-type TIM barrel family protein (.1) Lus10011631 [exp] 48 / 5e-07 ND 48 / 8e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173600 [exp] 490 / 4e-172 AT1G16350 661 / 0.0 Aldolase-type TIM barrel family protein (.1) Potri.008G082800 [exp] 470 / 2e-164 AT1G16350 717 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00478 [flax] [poplar] IMPDH IMP dehydrogenase / GMP reductase domain
Representative CDS sequence Show only first row Show all	>Lus10000276 pacid=23173746 polypeptide=Lus10000276 locus=Lus10000276.g ID=Lus10000276.BGIv1.0 annot-version=v1.0 ATGATCCCAGCTGATTCGTCCCTCCTCGTTCCATCCAGCTACGATCTGGATAAGCTCGATTCCCACCTGCAACATCAGCAAGGGCGGGACTTTGCTGTCC TGGCTGAGGAAGGAGGAGGAATTCTCGATGTGGTTACTAAGGTGGCGGTGGAGAAGGTGAAGGGATTTCCTAAGCTTGGAAAGGGGACTGTTGGTAGCGA CGGATCTTGGATGGTTGGAGCTGCGGTTGGAACGAGGGAATCAGACATAGACAGTGAGAGGCTGGCGCATTTGGTTAAGGCAGGGATTGATGTGGTGGTC CTGGATAGCTCTCAAGGGAACTCAATTTACCAGATTGAGATGATCAAATACGTCAAGAGGACTTATCCCCAGCTGGATGTGATTGGTGGGAATGTGGTGA CAATGAGCCAGGCGCAGAATTTGATTGCTGCTGGTGTCGATGGATTGAGAGTTGGCATGGGATCCGGCTCCATCTGCACCACTCAAGAAGTTTGCGCTGT TGGGCGTGGCCAGGCAACTGCCGTGTACAAAGTCGCGTCTGTAGCTGCTCGGAGCGGCGTCCCAGTCATTGCAGATGGTGGGATTTCAAATTCTGGGCAC ATTGTGAAGGCTCTGGTCCTTGGAGCATCTACGGTGATGATGGGTAGCTTTTTAGCTGGAAGTGCTGAAGCTCCGGGAAAATATGTGACTACGGAAGAGG GGAAAGTGAAAAAGTATAGGGGTATGGGATCACTGGAGGCAATGAGTCAAGGCAGCGATCAGAGGTACTTAGGTGACAAGTCTAGGCTGAAGATTGCACA GGGAGTGGTGGGAACAGTTAAAGATAAAGGCTTTGCTCTGGAGTTCATACCATACACCATGCATGCAGTCAAGCAAGGGTTTCAGGATCTGGGAGCATCT TCTCTGCAATCTGCGCATGAGTTGCTGAGATCTCAAACCCTGAGGCTTGAGAGGCGTGTACTGAATGAAGCCTTTGCTGTTCCAATTGTATCCAGTCTTA AGCGAAGCTGCAACCCCAGAGGTGCTCAGAGGCGAGAGCATCGTATCCAGCATCAACCAGTGGAAGATGAAGACGACGATAACTACCATTGGCCAGCTTC CAGCTCGCCTTGTCATGTGATCTTCCATTTCCTCTTCCGCCGCCGCCGCCTCTACGCTTCACGAAATCGCCTCTTCTCACCCTAA
AA sequence Show only first row Show all	>Lus10000276 pacid=23173746 polypeptide=Lus10000276 locus=Lus10000276.g ID=Lus10000276.BGIv1.0 annot-version=v1.0 MIPADSSLLVPSSYDLDKLDSHLQHQQGRDFAVLAEEGGGILDVVTKVAVEKVKGFPKLGKGTVGSDGSWMVGAAVGTRESDIDSERLAHLVKAGIDVVV LDSSQGNSIYQIEMIKYVKRTYPQLDVIGGNVVTMSQAQNLIAAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASVAARSGVPVIADGGISNSGH IVKALVLGASTVMMGSFLAGSAEAPGKYVTTEEGKVKKYRGMGSLEAMSQGSDQRYLGDKSRLKIAQGVVGTVKDKGFALEFIPYTMHAVKQGFQDLGAS SLQSAHELLRSQTLRLERRVLNEAFAVPIVSSLKRSCNPRGAQRREHRIQHQPVEDEDDDNYHWPASSSPCHVIFHFLFRRRRLYASRNRLFSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16350			Aldolase-type TIM barrel famil...		Lus10000276 [exp]	0	1
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10043180 [exp]	1.4	0.8082
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	2.4	0.7920
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	8.2	0.7984
AT5G55530			Calcium-dependent lipid-bindin...		Lus10032578 [exp]	8.9	0.7362
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041513 [exp]	9.4	0.7632
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	9.5	0.7510
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Lus10021740 [exp]	11.2	0.7379
AT1G16740			Ribosomal protein L20 (.1)		Lus10006327 [exp]	11.5	0.7501
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	14.2	0.7473
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	15.9	0.7041

Compare expression of checked genes

Lus10000276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.