Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79480 148 / 6e-41 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G67460 116 / 3e-29 O-Glycosyl hydrolases family 17 protein (.1) AT4G13600 98 / 9e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G35740 91 / 4e-22 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G04910 89 / 6e-22 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G18650 88 / 1e-20 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G30933 84 / 2e-19 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT3G13560 88 / 6e-19 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT4G29360 87 / 8e-19 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G05430 82 / 1e-18 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001764 [exp] 204 / 9e-63 AT1G79480 165 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10010478 [exp] 129 / 1e-32 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10002466 [exp] 118 / 1e-31 AT5G67460 175 / 1e-53 O-Glycosyl hydrolases family 17 protein (.1) Lus10003803 [exp] 125 / 2e-31 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10040522 [exp] 96 / 7e-23 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 94 / 1e-22 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10038801 [exp] 92 / 1e-22 AT5G35740 146 / 1e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10034690 [exp] 95 / 2e-22 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 94 / 2e-22 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173500 [exp] 155 / 5e-44 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 155 / 6e-44 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.006G008200 [exp] 130 / 2e-35 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.017G055700 [exp] 98 / 3e-24 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.006G016800 [exp] 94 / 2e-23 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.014G164600 [exp] 94 / 2e-23 AT5G35740 179 / 8e-60 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 94 / 2e-22 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 93 / 2e-22 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G012000 [exp] 92 / 3e-22 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.008G095300 [exp] 90 / 4e-21 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10000278 pacid=23173747 polypeptide=Lus10000278 locus=Lus10000278.g ID=Lus10000278.BGIv1.0 annot-version=v1.0 ATGAGGCGTAGCTGCAATGTTGTCCCTCGCCGCCTGCTTCTTCTGTATTTCACGTTTGCTGCTGTTTCTTTATGCTCTGTCTCCAGTGGAAGGGGATTGG CGGGCGAAAAGGGCGGCAAACTGAGAAGCACAACCAGGTTCGACATTGCTTCTTTGATCCTCCAAAGAGAGACGATGGCAAATGCTGAGGAGGCTTCCAA TACGGCGCCGTACGTTGCTTCCCCTTTCTCGTTGACTCCTTACGACACCTTGTCCCCTCAGAATTCCCCTGCTGACTGCCTCAACCCTCCACAGCAAGGT TTGCCACAGCCTCTTCCACCCCCGTCGTCGTCCTCCTCCTCCGGCGGCTCCGGCTCCGACTTCCCTACCCCTTCCAGTCCCACCATACTACCTCCCCCTG GCGCACTCGCCCCAATTCTTCCCGGCCCAGCCACTCCAGGTATAGATGTTCCTGGCCCACCACCCAGCGATGCATTTCCGGGCCCACCAACAACTGTCCT CAGCCCACCAAGTGATGTCTTCCCTGGCCCACCTTCAACTGTCCCGAGCCCGCCCATTGACGTGCTTCCGGGGCCACCTTCTTTCGTTCCAAGCCCGCCT AGCGAAGTGCTTCCGGGTCCACCTTCTTTCGTACCTAGCCCGCCCGCGTATGTGAATCCCGTCCCAAATCCGCCTGAGGCCGAATCCCCGCCGACATTTC AAGGGCCGAGCCCGCCCATGGCTTTCTTGCCGCCGATTGTGTACCCACCTCCAACGGGTCCACCAAGACCTAAAACGGGGCCACCCGCTGCACTGTGGTG CGTGGCGAAGCCATCAGTGCCGGATCCGATAATGCAAGAGGCAATGAACTACGCTTGCGGGTCGGGTGCGGATTGTGAGTCATTACAGTCGAGTGGACCG TGCTTTCAACCAGACACGGTGTATGCACACGCGTCCTATGCTTTCAACAGCTACTGGCAACGAACCAAAGGGGCCGGGGGTTCGTGCTCTTTTGGTGGCA CTGCTATACTTGTCACCGTGGATCCAAGTCAGTATAACTACTCTATTACTTCTACTTGA
AA sequence Show only first row Show all	>Lus10000278 pacid=23173747 polypeptide=Lus10000278 locus=Lus10000278.g ID=Lus10000278.BGIv1.0 annot-version=v1.0 MRRSCNVVPRRLLLLYFTFAAVSLCSVSSGRGLAGEKGGKLRSTTRFDIASLILQRETMANAEEASNTAPYVASPFSLTPYDTLSPQNSPADCLNPPQQG LPQPLPPPSSSSSSGGSGSDFPTPSSPTILPPPGALAPILPGPATPGIDVPGPPPSDAFPGPPTTVLSPPSDVFPGPPSTVPSPPIDVLPGPPSFVPSPP SEVLPGPPSFVPSPPAYVNPVPNPPEAESPPTFQGPSPPMAFLPPIVYPPPTGPPRPKTGPPAALWCVAKPSVPDPIMQEAMNYACGSGADCESLQSSGP CFQPDTVYAHASYAFNSYWQRTKGAGGSCSFGGTAILVTVDPSQYNYSITST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79480			Carbohydrate-binding X8 domain...		Lus10000278 [exp]	0	1
AT1G79480			Carbohydrate-binding X8 domain...		Lus10001764 [exp]	1.4	0.9485
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	2.0	0.9581
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10008946 [exp]	5.5	0.9381
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	5.9	0.9319
AT5G50290			unknown protein		Lus10042105 [exp]	8.4	0.9229
AT2G46630			unknown protein		Lus10030217 [exp]	8.5	0.9300
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	9.2	0.9315
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	9.6	0.9372
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004600 [exp]	11.2	0.9316
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	13.1	0.9238

Compare expression of checked genes

Lus10000278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.