Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37050 457 / 2e-159 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT4G37070 455 / 1e-158 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 442 / 2e-153 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT2G26560 417 / 1e-143 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT5G43590 361 / 6e-122 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT2G39220 111 / 3e-26 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G63200 106 / 3e-25 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT3G54950 107 / 8e-25 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 107 / 1e-24 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019637 [exp] 915 / 0 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10009340 [exp] 619 / 0 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10028347 [exp] 140 / 2e-36 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10040394 [exp] 126 / 1e-31 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 125 / 2e-31 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 124 / 6e-31 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10023512 [exp] 117 / 3e-28 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 105 / 2e-24 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 63 / 1e-10 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G042200 [exp] 512 / 0 AT4G37070 505 / 4e-179 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Potri.002G128000 [exp] 454 / 1e-158 AT2G26560 543 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G034000 [exp] 446 / 3e-155 AT2G26560 529 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 444 / 3e-154 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033900 [exp] 439 / 2e-152 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033200 [exp] 437 / 2e-151 AT2G26560 533 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033400 [exp] 436 / 5e-151 AT2G26560 530 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033000 [exp] 432 / 1e-149 AT2G26560 526 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134200 [exp] 432 / 1e-149 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133901 [exp] 431 / 4e-149 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10000279 pacid=23149885 polypeptide=Lus10000279 locus=Lus10000279.g ID=Lus10000279.BGIv1.0 annot-version=v1.0 ATGCTAAAATATCCGATCAAGTCCGAGTTTACTTTGTTTGACCGGGATCCGCTGGTCCGTACCAGTCCTAGTCCTCCTCCTGTATCTGGACCACTCTTTC GGTCCCTTCCCGCAATGAATTCAGCATTGCAACTTAGAAGCGGTCATCATTATGAGGGGAGCTCTATCAAACTAACTACAATGGAGGAAGGAAGAATGGC TTCACAGCCTGAGTACGGAAAGCTGGTTACGATTCTGAGCATCGACGGAGGAGGGATCAGAGGAATCATACCTGGAGTTATTCTTGCGTATCTTGAGTCC AAACTTCAGGAGCTTGATGGGGAGGAAGTGAGGATTGCAGACTACTTTGATGTGATGGCAGGGACAAGCACAGGAGGACTCATTGCAACAATGTTAGCTG CACCAAATGAGACCAAACGCCCTCTCTTTGCTGCCAAGGAACTTGTCCCTTTCTACCTCCAACATGGTCCTAAAATCTTCCCTCAGAACAGAGGTGTATT TGCAGGAATGGTGAAGCTATGGAAGGCTGTGAATGGGCCAAGATATGATGGGCAGTACATGCGGGAGTTGATAAGAACAACGTTAGGGAGCTCAAAGCTG CATGAGACCTTGACAAATGTGGCCATTCCAACTTTTGACATCAAGAAGCTTCAACCTGTTATCTTCTCTTCCTATCAGGTGGAAAGAGATCCATTTCTAG ATGCTCAACTTGCAGACATCTGCATATCAACTTCTGCAGCTCCAACATTCTTTCCTCCACATCACTTCAAGAACCAAGTTTCAGAAGGGAAAGTCAGAGA GTTCGACCTCATTGATGGTGCCATAGCTGCTAATAATCCTACAGTGGTAGCCATAAGGGAAGTGACGAAGCACATAATGAAGAATCCAAGTGGGTTTTCG ATCAAGTCGACGGATTACAACAAGTTTCTTGTGATCTCACTAGGGACAGGGTCCAACAAGACTGAAGAGAAGTACAATGCAACAGTTGCTTCCAAATGGA GTGTCATAAGCTGGCTGTATTACAACGGCTCGTCTCCATTGATCAGTTGCTTCAGCGATGCCAGTTCGGATATGGTTGATTACCACAATTGTCTGGTTTT CAAGTCTCTGGAATCTGAAGACAATTATCTCAGAATAGATGATGACAAGCTGCAAGGAGATGTCGTGTCGATGGACTTGGCTACAGAGGAGAATCTGAAG AATCTAGTGACAGAGGGTGACAAGCTATTGAAGAGCCCCGTAACTCGCCAAGATCTAGATACCGGTCGATACGAGCCTGTCGAAAATGCTGGTACCAATG AAGAAGCACTCCAGAGGTTTGCCAAGCTACTTTCAGAGGAAAGGAAGTACCGAGGCTCACTAGTTCGGAATTCGGCTTGA
AA sequence Show only first row Show all	>Lus10000279 pacid=23149885 polypeptide=Lus10000279 locus=Lus10000279.g ID=Lus10000279.BGIv1.0 annot-version=v1.0 MLKYPIKSEFTLFDRDPLVRTSPSPPPVSGPLFRSLPAMNSALQLRSGHHYEGSSIKLTTMEEGRMASQPEYGKLVTILSIDGGGIRGIIPGVILAYLES KLQELDGEEVRIADYFDVMAGTSTGGLIATMLAAPNETKRPLFAAKELVPFYLQHGPKIFPQNRGVFAGMVKLWKAVNGPRYDGQYMRELIRTTLGSSKL HETLTNVAIPTFDIKKLQPVIFSSYQVERDPFLDAQLADICISTSAAPTFFPPHHFKNQVSEGKVREFDLIDGAIAANNPTVVAIREVTKHIMKNPSGFS IKSTDYNKFLVISLGTGSNKTEEKYNATVASKWSVISWLYYNGSSPLISCFSDASSDMVDYHNCLVFKSLESEDNYLRIDDDKLQGDVVSMDLATEENLK NLVTEGDKLLKSPVTRQDLDTGRYEPVENAGTNEEALQRFAKLLSEERKYRGSLVRNSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10000279 [exp]	0	1
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10019637 [exp]	1.0	1.0000
					Lus10008816 [exp]	1.4	0.9883
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015169 [exp]	1.7	0.9869
AT1G15260			unknown protein		Lus10035880 [exp]	3.2	0.9833
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	3.5	0.9856
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	4.6	0.9764
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	4.9	0.9710
					Lus10014719 [exp]	4.9	0.9831
					Lus10006417 [exp]	5.3	0.9666
					Lus10024084 [exp]	7.1	0.9701

Compare expression of checked genes

Lus10000279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.