Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47870 237 / 7e-80 RAD52-2B, RAD52-2 radiation sensitive 51-2, unknown protein AT1G71310 131 / 1e-38 RAD52-1B.2, RAD52-1B.1, RAD52-1A, RAD52-1 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001196 [exp] 382 / 4e-137 AT5G47870 239 / 7e-81 radiation sensitive 51-2, unknown protein Lus10002565 [exp] 362 / 4e-129 AT5G47870 237 / 8e-80 radiation sensitive 51-2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G158500 [exp] 248 / 7e-84 AT5G47870 233 / 3e-78 radiation sensitive 51-2, unknown protein Potri.001G072300 [exp] 244 / 2e-82 AT5G47870 223 / 3e-74 radiation sensitive 51-2, unknown protein Potri.019G068500 [exp] 132 / 1e-38 AT1G71310 233 / 9e-79 radiation sensitive 51-1, cobalt ion binding (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000280 pacid=23177351 polypeptide=Lus10000280 locus=Lus10000280.g ID=Lus10000280.BGIv1.0 annot-version=v1.0 ATGGCTGTGCAGTGCAATGGCAGCAGCTATTTTGTGGCTAAATCAACGCAGGCTGCTGTATCACCTTCGCTAGCATCTTCATTCTATAAAACAAAAAGAA GTAGAAATCGTAATATAGGGGGTTTCGGCAAGGTTCGGCTCGTGTCTGCACTTGGTGGTGGTGGCGGGGGAAACAGTAGCAATGATGGTAACAAGAAGAA GGGTGTTCCTAACTCCAATTATGTGGTGCCTTTGGATAAATCCTTCTCTTCCGCACAATCTTCCTGTATAACTCGCCCACTTGCGGAGATCTTACGTGAT CTGAACAAGAGGATTCCGGAAAACATAATTAAGCCTTCGCAACCTCCGACCTCCATTCCCTGGTACCATGCCAACCGCATGTTGAGCTTCTATGCCCCTG GATGGTGTGGAGAAATAAGGGATGTTATATTCTCAGACAATGGTGGTGTTACTGTCGTTTATCGTGTTACGATACGTGGATCTGATGGAGAGGCACACCG TGAATCAAGTGGCACAGTATCACCTGTTGACGGCAACATTGTGGATCCCGTTGCAGCAGCAGAAGAAATAGCCTTCTGCAGAGCGTGTGCTAGGTTTGGC CTTGGCTTGTATCTGTACCATGAAGTATAA
AA sequence Show only first row Show all	>Lus10000280 pacid=23177351 polypeptide=Lus10000280 locus=Lus10000280.g ID=Lus10000280.BGIv1.0 annot-version=v1.0 MAVQCNGSSYFVAKSTQAAVSPSLASSFYKTKRSRNRNIGGFGKVRLVSALGGGGGGNSSNDGNKKKGVPNSNYVVPLDKSFSSAQSSCITRPLAEILRD LNKRIPENIIKPSQPPTSIPWYHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTIRGSDGEAHRESSGTVSPVDGNIVDPVAAAEEIAFCRACARFG LGLYLYHEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	0	1
AT2G14045			unknown protein		Lus10042548 [exp]	1.7	0.7986
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10015840 [exp]	7.4	0.7466
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	8.8	0.7562
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024319 [exp]	10.2	0.7636
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	10.6	0.7681
AT5G58070		ATTIL	temperature-induced lipocalin ...		Lus10019048 [exp]	16.7	0.7709
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	16.9	0.7845
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	21.9	0.7395
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Lus10013089 [exp]	23.2	0.7543
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	23.7	0.7477

Compare expression of checked genes

Lus10000280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.