Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47920 76 / 6e-17 unknown protein AT2G42180 46 / 3e-06 unknown protein AT4G26130 45 / 2e-05 unknown protein AT3G57950 44 / 2e-05 unknown protein AT5G13880 44 / 4e-05 unknown protein AT4G16790 41 / 0.0004 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002566 [exp] 334 / 1e-117 AT5G47920 79 / 3e-18 unknown protein Lus10021036 [exp] 43 / 6e-05 AT3G57950 108 / 7e-30 unknown protein Lus10004758 [exp] 41 / 0.0007 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160300 [exp] 84 / 1e-19 AT5G47920 172 / 1e-54 unknown protein Potri.014G140000 [exp] 68 / 7e-14 AT5G47920 114 / 1e-31 unknown protein Potri.001G008160 [exp] 42 / 1e-05 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.006G152200 [exp] 45 / 2e-05 AT5G56980 103 / 2e-25 unknown protein Potri.006G191100 [exp] 44 / 2e-05 AT5G06790 141 / 4e-42 unknown protein Potri.016G047800 [exp] 44 / 3e-05 AT5G06790 137 / 1e-40 unknown protein Potri.003G062300 [exp] 41 / 6e-05 AT1G15385 58 / 8e-13 unknown protein Potri.001G008080 [exp] 40 / 6e-05 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1) Potri.001G171701 [exp] 40 / 0.0001 AT1G15385 53 / 7e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000281 pacid=23177349 polypeptide=Lus10000281 locus=Lus10000281.g ID=Lus10000281.BGIv1.0 annot-version=v1.0 ATGACGACGTCGAAGAGTAAGAAAGCTATGTTGAAGCATATAATATCGTCTTTGCTGACTTCGGTCAAATCTGCGGTTGCTGGGAACAAAACAAGTGAAG CAGTGAAAGCTCGGGTTGCCATGACGTCATTGGTAATGGGGAGAAAGAAAAAGATGTTGCAATTGCAGCTGGCTTCCGTCTGCGACAAGATTAATACAGC TCTTGGTGGAAGTAGCCGCAGCCACACGGTTGATGTCAACGACAGCTGGGAGGATCACCGGGCAATAGTTTTGTACAATCCTCCTTATCTCAATGGCTGC AGTGGGATGCATCCTGCTCCTGGCTGCTGCTGCTGCACAAATAATGTTGATGATGGAGTACTGCCGGAGGTTAATAACGCTACTCATTCTGATGATGATG ATGATTACGAGGCTGCAGCAGTTCAACATAGCCTTATGATCATTAATCCTAACGAGATACATGAAGAAAAGAACCCGTGTCAGCTGTATGCTGTTGATGT CCACGATGATAAGAGCTGCAGCAGTACTGATCATTTCCGTGATCATGATCAGATGCTAAGTAACGGTGGCAGCATTAATGAGGAAGAAGATATTGATGAG GTGGCGGACATGTTCATCATGAGATTCCATAAACAGATGCGCCTACAGAAGCTGGAGTCCTTCAAAAGGTATCAGGAGATGCTCCAGCGCAGTCTTTAA
AA sequence Show only first row Show all	>Lus10000281 pacid=23177349 polypeptide=Lus10000281 locus=Lus10000281.g ID=Lus10000281.BGIv1.0 annot-version=v1.0 MTTSKSKKAMLKHIISSLLTSVKSAVAGNKTSEAVKARVAMTSLVMGRKKKMLQLQLASVCDKINTALGGSSRSHTVDVNDSWEDHRAIVLYNPPYLNGC SGMHPAPGCCCCTNNVDDGVLPEVNNATHSDDDDDYEAAAVQHSLMIINPNEIHEEKNPCQLYAVDVHDDKSCSSTDHFRDHDQMLSNGGSINEEEDIDE VADMFIMRFHKQMRLQKLESFKRYQEMLQRSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47920			unknown protein		Lus10000281 [exp]	0	1
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10005753 [exp]	104.7	0.6583
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028083 [exp]	153.4	0.6858
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10018633 [exp]	185.7	0.6762
					Lus10029354 [exp]	244.0	0.6464

Compare expression of checked genes

Lus10000281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.