Plant FIBer expression Database

Lus10000283 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G40020 160 / 3e-43 Myosin heavy chain-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072400
[exp]
231 / 4e-69 AT4G40020 219 / 3e-63 Myosin heavy chain-related protein (.1)
Potri.007G096600
[exp]
214 / 6e-63 AT4G40020 205 / 6e-58 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence
>Lus10000283 pacid=23157289 polypeptide=Lus10000283 locus=Lus10000283.g ID=Lus10000283.BGIv1.0 annot-version=v1.0
ATGAAGAGCTACGGTCTTGTGGAGGAAGTGGAGTCGTTGAGGACTCAGTTGAAGAAGGCGATTGAAGCGGAGGAGAATAGCATGACGGCTCTGGACGATA
TGGCGGTGGCGCTGAAGGAAGTGGTGATGGAATCGAAATCCGTTAGGGAGAAGCTGATCGCGACGGAAGGCGAGCTGGAGCATTACCGGAGGGAGACGGA
GGAGTCGAGGGAGAGGGTGAGGAACGCGGAGGAGAGGCAGAGGTTGAGGATTGAGGAAGTTAGGAAGGAGGCGGAGATGTACAAGAACGCGGCCGAGCGG
CTGAGGCTGGAATCGGAGGAATCGGTGATCGCGTGGAACGTGAAGGAGAAGGAGTTCGTGGAGTATATTCGGAAGGCGGAGGAGGAGAGGAGCGCGGCGG
CGGAGGAGAATCGGAGGCTTGAGGAGTTGGTAACGGAGGCGGAAAAGGGGGAGAAATCAGCCAAACAGGAAACTCAGAATTTGAGGGATATTATGAAACA
GGCGCTGAACGAAGCTACGGTGGCGAAAGAAGCTGCTGGAATCGCACAATCGGAGAATTCTCAATTGAAAGACGTGCTGGCGAAGAAGGACGACGCCTTG
GTTTTCATCACCAAGGAGAACGAAAGCATCCGAGCCAACGAAGCCGCCGCTCAGGAGAAGATCAAGAAATTGAAACAGAGATTGGCGGAGCTTCCCTCCG
CCTCCGCCTCCGCCTCCGCCGCCACTGGTGGCGGGAAAGTCGAGGACAAGGATCGTCATAAAGAGAAGGATAAAGATAAAGAAGCGTCGACCGTCGTCAC
GGAAAAACAACACAAGTCTCACGGCGGAGGTGAAGCAACTCCAGCGGCGCCACCGCCGAAAGAGCACCAGAGGAAGCTGAGCAGCGCGTTCAGTTTCAAC
CTGAGGGAGCTAATAATCCCAACCACCAAAGCGAAGGAAGCGGACGAGCAAGAGAAGGTCAAGGATCACCACGAGAACGAGGAGTTCGAGGACGCGGAGG
ATTTCGATCCGCTCAAGGGATCGATCTTCGACGTGCGTGAGGCGCCGGTTGCGGCGGCGGCGGTACCGGCGGGGAGGCACCAGAGGAAGAAGTCGTTCTC
GTTCGCCGACCAGGAGCACGAGGCCGAGGAATTCGAGCATCTTGACGGGGACGATCTTGACGGCGACAGGAACAATCCCAGGAAGAAGAGAGCGCTGTTC
CGGAGATTCGGAGATATCATAACAAGGAGGAGAGGGTATCACCGGAAAGAGCCGTCGATCGGCGGCGGGGTGGATTTACTGAAGAAGGAACCGTCGCTGG
GGAGTGAAGGTCAGAAGAAAGAGACCCCCGGCGGCGGCGGGGAAAGTCACAGGAGGGAATTGTCGTCGACGTTGGAAGAATTTTGA
AA sequence
>Lus10000283 pacid=23157289 polypeptide=Lus10000283 locus=Lus10000283.g ID=Lus10000283.BGIv1.0 annot-version=v1.0
MKSYGLVEEVESLRTQLKKAIEAEENSMTALDDMAVALKEVVMESKSVREKLIATEGELEHYRRETEESRERVRNAEERQRLRIEEVRKEAEMYKNAAER
LRLESEESVIAWNVKEKEFVEYIRKAEEERSAAAEENRRLEELVTEAEKGEKSAKQETQNLRDIMKQALNEATVAKEAAGIAQSENSQLKDVLAKKDDAL
VFITKENESIRANEAAAQEKIKKLKQRLAELPSASASASAATGGGKVEDKDRHKEKDKDKEASTVVTEKQHKSHGGGEATPAAPPPKEHQRKLSSAFSFN
LRELIIPTTKAKEADEQEKVKDHHENEEFEDAEDFDPLKGSIFDVREAPVAAAAVPAGRHQRKKSFSFADQEHEAEEFEHLDGDDLDGDRNNPRKKRALF
RRFGDIITRRRGYHRKEPSIGGGVDLLKKEPSLGSEGQKKETPGGGGESHRRELSSTLEEF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G40020 Myosin heavy chain-related pro... Lus10000283
[exp]
0 1
Lus10000267
[exp]
1.0 0.8749
AT3G23240 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1... Lus10021193
[exp]
8.7 0.8351
AT1G01490 Heavy metal transport/detoxifi... Lus10036395
[exp]
14.6 0.8682
AT3G13840 GRAS GRAS family transcription fact... Lus10000532
[exp]
22.6 0.8456
AT4G21970 Protein of unknown function, D... Lus10021536
[exp]
22.7 0.8471
AT4G37530 Peroxidase superfamily protein... Lus10011079
[exp]
24.2 0.8264
AT5G16200 50S ribosomal protein-related ... Lus10009148
[exp]
33.8 0.8240
AT2G33580 Protein kinase superfamily pro... Lus10039406
[exp]
39.0 0.8035
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Lus10008600
[exp]
78.8 0.7450
AT3G25570 Adenosylmethionine decarboxyla... Lus10035083
[exp]
80.4 0.8091

Lus10000283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.