Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16780 179 / 1e-50 MDF, DOT2 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000639 [exp] 411 / 3e-137 AT5G16780 818 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10023155 [exp] 390 / 3e-129 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10032078 [exp] 64 / 2e-12 AT5G16780 47 / 8e-07 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Lus10014613 [exp] 52 / 2e-08 AT5G16780 110 / 6e-29 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082100 [exp] 203 / 5e-59 AT5G16780 767 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1) Potri.003G148501 [exp] 0 / 1 AT5G16780 0 / 1 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10000285 pacid=23157288 polypeptide=Lus10000285 locus=Lus10000285.g ID=Lus10000285.BGIv1.0 annot-version=v1.0 ATGATTCAGTTTAAGAAGCCAAAGAAAAAGAAATCCTTGCGAAAGAAGGATAAGTTGGACATTAAAGCTCTAGAAGAAGAAGCCATTGCTGAAGTGTTAG GAGCCGGTGATCTTGGTTCAAGGAATGATGGTAGAAGGAAGGCTAGAGAGGAGCAGGAGACACATGAGGCGGAATTGAGAACTGCTGCATATCAGCTAGC TTTAGCTAAAGCAGATGAGGCATCTAAAGCATTGCGATTAGGACACACAAATCCTGTTTCAAAGGAAGACATTGATGATGTGATGGTTGATGAGGAAGAT GATGATCTTCACAAAGCTATTGAAAAAGCTAGAAAATTGGCTCTGAAAAAGCAGAAAGATGCTCCAGTTGGTCCTGAAGCTATCGCTCGTCTTGCAACCA CCCTTAAGACAAATCAGATGACCGATGATCAAAATGGGGCCACAGACGAAGGACAAGAAGGCAGGGTTGTCTTCACTGAGATTGAAGAGTTTGTCTGGGG CTTGCAGTTTGATGAAGACGCCAATAAATCTGATACAGAAGATGTATTTGAAGAGGAAAATGATGCTACAGCAGCTATTCATGAGGAGAGAGAAGATATG GCTGATGGGTTGACAGAAGCAAATGAGACGGTTAAAGATGAAGACACTACCATGGAAGATGCGAAAGAGGTCACTGCAGCAGATGAGACCATTCATGAAG TTGCTGTTGGTAAAGGATTATCAGGCGCATTAAAGCTACTTCATGAAAGAAAGCATCAACTGGGGTGGTGGAAATATGGACAAGAAAAAGAGCAAGCTTG TTGGTATTGCCGCTTTAATAGTCCATTAAGCAACTTCTCAATCAAACCAAAAGCAATTCTAAAAAAAACAGAGTTCAAATCTTCCAATAGTTATGAGTTC ACCCAATCATTCGTCGAGATCTCAACTATTTCACCTTCTCCACTCGATTCCCATCATCGATGA
AA sequence Show only first row Show all	>Lus10000285 pacid=23157288 polypeptide=Lus10000285 locus=Lus10000285.g ID=Lus10000285.BGIv1.0 annot-version=v1.0 MIQFKKPKKKKSLRKKDKLDIKALEEEAIAEVLGAGDLGSRNDGRRKAREEQETHEAELRTAAYQLALAKADEASKALRLGHTNPVSKEDIDDVMVDEED DDLHKAIEKARKLALKKQKDAPVGPEAIARLATTLKTNQMTDDQNGATDEGQEGRVVFTEIEEFVWGLQFDEDANKSDTEDVFEEENDATAAIHEEREDM ADGLTEANETVKDEDTTMEDAKEVTAADETIHEVAVGKGLSGALKLLHERKHQLGWWKYGQEKEQACWYCRFNSPLSNFSIKPKAILKKTEFKSSNSYEF TQSFVEISTISPSPLDSHHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	0	1
AT1G15200			protein-protein interaction re...		Lus10003959 [exp]	2.2	0.9208
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	3.2	0.9121
AT5G47090			unknown protein		Lus10035063 [exp]	3.7	0.8978
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	4.2	0.8847
AT1G31870			unknown protein		Lus10034532 [exp]	6.3	0.8838
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	9.2	0.8838
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	12.2	0.9006
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	15.7	0.8889
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	16.4	0.8998
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10030685 [exp]	17.7	0.9050

Compare expression of checked genes

Lus10000285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.