Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16390 323 / 5e-108 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79360 285 / 5e-93 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16370 206 / 2e-62 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT1G79410 204 / 5e-62 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G73220 175 / 1e-50 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT3G20660 141 / 3e-38 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT3G13050 70 / 4e-13 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT3G05400 58 / 3e-09 Major facilitator superfamily protein (.1.2) AT4G04750 50 / 1e-06 Major facilitator superfamily protein (.1) AT3G51490 49 / 2e-06 TMT3 tonoplast monosaccharide transporter3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005825 [exp] 113 / 1e-31 AT1G16390 65 / 4e-14 organic cation/carnitine transporter 3 (.1) Lus10014801 [exp] 121 / 9e-31 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 117 / 3e-29 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10033336 [exp] 74 / 1e-14 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10005217 [exp] 61 / 4e-10 AT3G20660 221 / 2e-76 organic cation/carnitine transporter4 (.1) Lus10043061 [exp] 59 / 3e-09 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033337 [exp] 57 / 5e-09 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10017561 [exp] 56 / 2e-08 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10027576 [exp] 55 / 2e-08 AT3G13050 293 / 6e-96 nicotinate transporter, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174400 [exp] 328 / 6e-110 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 238 / 5e-75 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.016G039000 [exp] 222 / 2e-68 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.012G037400 [exp] 171 / 3e-49 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.015G029400 [exp] 169 / 2e-48 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.011G130533 [exp] 129 / 7e-34 AT3G20660 708 / 0.0 organic cation/carnitine transporter4 (.1) Potri.007G003000 [exp] 71 / 2e-13 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 68 / 1e-12 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 68 / 2e-12 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G151700 [exp] 67 / 4e-12 AT3G13050 294 / 2e-91 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10000286 pacid=23158589 polypeptide=Lus10000286 locus=Lus10000286.g ID=Lus10000286.BGIv1.0 annot-version=v1.0 ATGTCGTTGCCGGGAATTTCTTACGTCAATAGAGGAGGGTCTTGGAGGAGCTTGTACGTTTGGACTTCGTTGCCGGTTTTAGTTTACAGTGCCTTGGTGT GGTTGTTTGTCAGGGAATCGCCACGGTGGCTTTTAATTAAGGGACGGAAGGAGGAAGCTGTGGCTGTACTTGAGAGTCTTGCGCCGCCGCCACCAGTCTC TGGTACTCTGACCAGTTTCTCGGAAGTAGTACTAACGACAGAATACAACAACAACGACGCCAACGTGGATATCTACTCAGCACTGAGGATCCTAGTCAAG AAAAAGTGGGCCCTGAGGCGACTTCTCTCAGTCATGACGTTGGGGGTAGGAATTGGACTCATTTACTACGGCATGCCGTTGGCTCTCGACAACTTGGACA TCAACCTCTACCTTGGCGTGCTCCTCAACGCTTTCTCGGAGCTTCCGTCTTCTCTCGTCAACTTTCTCCTCATTGATCGCATAAACAGAAAGACTTCTCT ACTCGCCTTCACATGCCTCAGCGGCGCGTGTAGCGTGGTCGCGGCCGCAAGCGGCCCCATGGGGAAATGGACCCAGATAGGGGCGGAGATGGTCTCGTTC TTCAGCGCTATCACTTCTTTCAACATACTCCTCATCTACACACTCGAGTTGTTCCCGACGTGTGTGCGGAACTCGGCGGTTGCAATGACGAGGCAGGCGC TGGTGCTAGGTGGCGCATTTGGTCCATTGGTGGTTGCACTTGGTCGAGAGAGTGGAGGTGCGTTGTCATACGGAGTGTTTGGAATGGTTATTGCAGTCTG TGCCGTGGCGGTGGTCCCGTTGCCAGAGACACGGAAAAAGTCGCTTAGCGATACGATGGAGGAGGAGGAGTTTAAAGCAAATTATGGTCAATTGTCATCA ACCTTTGTTTGA
AA sequence Show only first row Show all	>Lus10000286 pacid=23158589 polypeptide=Lus10000286 locus=Lus10000286.g ID=Lus10000286.BGIv1.0 annot-version=v1.0 MSLPGISYVNRGGSWRSLYVWTSLPVLVYSALVWLFVRESPRWLLIKGRKEEAVAVLESLAPPPPVSGTLTSFSEVVLTTEYNNNDANVDIYSALRILVK KKWALRRLLSVMTLGVGIGLIYYGMPLALDNLDINLYLGVLLNAFSELPSSLVNFLLIDRINRKTSLLAFTCLSGACSVVAAASGPMGKWTQIGAEMVSF FSAITSFNILLIYTLELFPTCVRNSAVAMTRQALVLGGAFGPLVVALGRESGGALSYGVFGMVIAVCAVAVVPLPETRKKSLSDTMEEEEFKANYGQLSS TFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Lus10000286 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	2.8	0.9466
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	3.9	0.9511
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	9.3	0.9367
AT5G65495			unknown protein		Lus10002656 [exp]	9.5	0.9345
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	9.6	0.9359
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	9.8	0.9279
AT4G38260			Protein of unknown function (D...		Lus10012253 [exp]	10.1	0.8949
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	10.8	0.9110
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004559 [exp]	12.8	0.9187
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	13.7	0.9260

Compare expression of checked genes

Lus10000286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.