Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12800 467 / 6e-153 Nucleic acid-binding, OB-fold-like protein (.1) AT3G23700 77 / 8e-15 Nucleic acid-binding proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008475 [exp] 738 / 0 AT1G12800 207 / 3e-58 Nucleic acid-binding, OB-fold-like protein (.1) Lus10022587 [exp] 73 / 2e-13 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124200 [exp] 499 / 3e-165 AT1G12800 726 / 0.0 Nucleic acid-binding, OB-fold-like protein (.1) Potri.014G148500 [exp] 76 / 3e-14 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000288 pacid=23168785 polypeptide=Lus10000288 locus=Lus10000288.g ID=Lus10000288.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTAGCACTCACCACCGTCGCCGTAGCAGCAACCACCTCATCAACTGCTGCTTGTTCTTCATTCGCCGGCATTCAATTCTCTTTACCTCTTC CGCAATCCCGGTTCAGTAGGTCCTCCAGAAGACGGAGAAGAGAGCTCGCTTTCCCGAGGAAGAGCAGGCTCATCGTTTCCGCAGCTTCGAATGGACCGGA GCTTGATGAGTGGGACCAAATGGAGCTCAAACTCGGCCGCTACATAGGTGAAGACCCCAAACTCACCCTCGCCAAGATAAAGGCTAAGAAGTTGTATCCG GATGCTTCGTATTTAGAAGTTGAGAAGGAGTTCCGTAGGAACAAAGGGAAGATGGAGGAGATAGAGGAGCTTCCTTTTGATGTCTCTAGTAGAAGGAAGC AGAAGTCACCGATTCCGTCGTCGTCGTCGTCGTCGTCGGATGGTTTGAATTTGAATCGGCCTGTGTTGAAGCAAGGAATGAAGTTCCAAGAGGTGGTTAG GAAACCTGTAAAGATGCCAGTGATGAAGAAACCGGGTGGTCCCGTTGTTGGTGATAGCAGGAGTAGTAGTGTCACTGTCAAGCGTAGTGTTCCTGATGTT ATCTTGAGGAAACCAACTGTGTTTGGTGTAGATTATGATGATAAGGAAGATGAAGGTTTGAAGTCTGGAGTGAAGATGATTGAGCCTAGTTTGATGATGA AGATGAGGAGTGAGCGCAATAACGTGAGGGTAACTGATATGACACTTTTGAGAAAGCCTGAGACCGTCAGTGTTGAGAAGAAGCAAGAGTCTCCTGCCAG TGTGGATGGTACAGTTAATGATCCGGCGCTCTTGAGAAAACCGGAGACTATGAGTGTTGAGAAGAAGCAAGAGTCTCCTGCGAATGTGGATGGTAGAATG GGGAATGAAGTGAAGCTGCAGAGTGTGAGCATGGAGAAGAGGCAAGAGTCTCCTGCCAATGATATGACACTTCTGAAAAAGCCGGAGAATATGAGTTTCG AGAAGCAGCAAGAATTCTATGCTATTGTCGATGGAACAGTTCACGGAGGTGATGGATTGGTAATGGGAGATGAAGTGAAACCAGAGAGAAAGAGTGTTGA GAAAAAGCAAGAGTCTTCTGCCAATGTGGACGGTAAAGTTAATAGAGGTGATGGATCTGCGATGGGGAATGAAGTGAAGGATAGCTACATTGGTTTTACT CTGAATCAGAATCCTGTGAGCGCGAAAAATGAGCTTCAAGAGGTTTCAGAAACTGGAAGTGCGCCACTTGGACAAGAAGATGAAGTTGAACACAAACCTG CTGTAGTTGTTTTTCAAGAAATGCAGCAGGAGAAAAGCATTATTCAGTCTAATGAAGTGGAAGATGATTCCGTCTCCAAGTTGTCTGTAGAAACATCACT GCAGGGAAAACCAAAGAGATTAGACCAACCAGTGAAAGAAAGACCGATGTCTATTGACCAAACAGTTGTTTCGGATGGAAGCAGTAATCTCCGAAATACG TCCCATATGGAGGCTGTTGACTGGTCCAGGGCTGAGGACATACTCAAGTCAGGGGATAGAATTCATGTACAGCTATTAAGCTCTAGAACACACGGATTCA TTGTCTCTTTTGGCTCGTTAGTAGGATTTTTGCCATATGGCTATATGGCTGCAAGATGGAAATTCGTTGTTTTTGAGTCTTGGTTGAGGCAGAAGGGATT TGATCCGTCTGCATATAAACAGAATGAAGAAATCAGTGACATCAATGATGCCTCAGATAAGAACAGTTCACTTGATTCAACAACAGAACCAGCGACTACT ACAGAAACTCCAGGAGAAATTACCTCTGATATGAAGTTGGAAGATCTTCGTAAAATTTATAACCAGGAGAAGCTCAATTTCCTCACCTCACTTGTTGGTC AGAAATTGAAAGCGAATGTTGTAATTGCGGATAAAAGGTCTAGAAAACTCATATTCTCTATGGGCCCTAGAGAAAAGAAAGAATCGATACAGAAGAAGAA AGCTCTTATGGCTAAACTTCAAGTTGGAGACGTCGTGCAGTGCTGCGTAAAAAAGATAACCAATTTTGGTGCACTGATTCATCAGTCTGAAGTATCATGG GATGCCACTTTGGACCTGGCAGCATATTTTAAACGTGGTCAGATAGTAGAAGCAAAAGTTCACGAGCTGGATTTCAAACTTGACCGTATCTGCTTGTCAC TTAAGGATATGACGCCAGATCCATTGGCTGAGGCATGGGGGGAGTCTATATTTGGCGGCCGTGACCCTTCACGCGGGAAACTACAGCCAGCAGAAGAAGA TAGTGAGTGGCCTGAAGTAGAGTCCTTGATTAAGGAACTAGAACAAATTGAAGGAATTCAGTCGGTAACCAAAGGCCGTTATTTCTTAAGTTCAGGTTTA GCTCCAATGTTCCTGGTCTACATGGCATCCATGATTGATGATCAGTACAAGTTACTTGCTCGTGCCGGAAACAAAGTCCAAGAGGTGATCGTTCAATCGT CGCTCGACAACGAAGAAATGAAGTCGATAATCTCGTCGTGCGCCAACAAAGTTGAGTAG
AA sequence Show only first row Show all	>Lus10000288 pacid=23168785 polypeptide=Lus10000288 locus=Lus10000288.g ID=Lus10000288.BGIv1.0 annot-version=v1.0 MEALALTTVAVAATTSSTAACSSFAGIQFSLPLPQSRFSRSSRRRRRELAFPRKSRLIVSAASNGPELDEWDQMELKLGRYIGEDPKLTLAKIKAKKLYP DASYLEVEKEFRRNKGKMEEIEELPFDVSSRRKQKSPIPSSSSSSSDGLNLNRPVLKQGMKFQEVVRKPVKMPVMKKPGGPVVGDSRSSSVTVKRSVPDV ILRKPTVFGVDYDDKEDEGLKSGVKMIEPSLMMKMRSERNNVRVTDMTLLRKPETVSVEKKQESPASVDGTVNDPALLRKPETMSVEKKQESPANVDGRM GNEVKLQSVSMEKRQESPANDMTLLKKPENMSFEKQQEFYAIVDGTVHGGDGLVMGDEVKPERKSVEKKQESSANVDGKVNRGDGSAMGNEVKDSYIGFT LNQNPVSAKNELQEVSETGSAPLGQEDEVEHKPAVVVFQEMQQEKSIIQSNEVEDDSVSKLSVETSLQGKPKRLDQPVKERPMSIDQTVVSDGSSNLRNT SHMEAVDWSRAEDILKSGDRIHVQLLSSRTHGFIVSFGSLVGFLPYGYMAARWKFVVFESWLRQKGFDPSAYKQNEEISDINDASDKNSSLDSTTEPATT TETPGEITSDMKLEDLRKIYNQEKLNFLTSLVGQKLKANVVIADKRSRKLIFSMGPREKKESIQKKKALMAKLQVGDVVQCCVKKITNFGALIHQSEVSW DATLDLAAYFKRGQIVEAKVHELDFKLDRICLSLKDMTPDPLAEAWGESIFGGRDPSRGKLQPAEEDSEWPEVESLIKELEQIEGIQSVTKGRYFLSSGL APMFLVYMASMIDDQYKLLARAGNKVQEVIVQSSLDNEEMKSIISSCANKVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	0	1
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	2.2	0.9438
AT2G04360			unknown protein		Lus10012308 [exp]	2.4	0.9409
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	2.8	0.9372
AT1G62780			unknown protein		Lus10032229 [exp]	5.7	0.9382
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10040390 [exp]	6.5	0.9170
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	6.5	0.9309
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Lus10036027 [exp]	6.5	0.9286
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	8.4	0.9349
AT5G48830			unknown protein		Lus10025934 [exp]	10.2	0.9010
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	10.8	0.9237

Compare expression of checked genes

Lus10000288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.