Plant FIBer expression Database

Lus10000289 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008665
[exp]
58 / 5e-10 AT5G55150 63 / 9e-11 Protein of unknown function (DUF295) (.1)
Lus10013995
[exp]
51 / 1e-07 AT2G17030 52 / 6e-07 F-box family protein with a domain of unknown function (DUF295) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G015601
[exp]
45 / 8e-06 AT4G22660 59 / 3e-09 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03478 DUF295 Protein of unknown function (DUF295)
Representative CDS sequence
>Lus10000289 pacid=23168787 polypeptide=Lus10000289 locus=Lus10000289.g ID=Lus10000289.BGIv1.0 annot-version=v1.0
ATGGAAGATCAGATTGGATGTGGCTCCCCTGCGTGGTTTTGGAATCTATCCTATCATAGTTCTATATCAGATTCAGCGTTGTGTGTAAGCCGTGGCATTC
GGTCTAGGGAACAAAAACTGCGTCACATGGCCACGGCCCACGAACAGGGATGCAAAGAAGTGGCCGAACCACTTCATTTCGAAGTCTTGCAACGAGGTCT
TGAGCGCTATCAATATCAATCCTCTGACGACATCATGTTTGACAAGAACAGGAAATGGGTTTACGCCACCGACGTGGATAGAGGGATTGTTGTGTGTGTT
AACGTCGACACGGATGATTTGATAGAGGTGGTCCGACCGCCGAGTAGTAACATGCCGTACGCACTATTGGTCGAAACGACGAACCGAGAAGTATTAATGA
TTGAGTTCTCCCATGGTTTTCCAATGAGAGTGTTGAAACTGCAAGCAGATTCGAGTTTCGTGGAAGTCGAAGATCTGAACGGGGAAGTGGTGTTTCTAGG
GGAGGATAATCATTCCGTTACAGCGGTAACGGCACAAGATTCGTGTGGTGTTGAGGCTAATTGCCTATATTATTTGAGCTTTAAACAGCATTGTATTTAG
AA sequence
>Lus10000289 pacid=23168787 polypeptide=Lus10000289 locus=Lus10000289.g ID=Lus10000289.BGIv1.0 annot-version=v1.0
MEDQIGCGSPAWFWNLSYHSSISDSALCVSRGIRSREQKLRHMATAHEQGCKEVAEPLHFEVLQRGLERYQYQSSDDIMFDKNRKWVYATDVDRGIVVCV
NVDTDDLIEVVRPPSSNMPYALLVETTNREVLMIEFSHGFPMRVLKLQADSSFVEVEDLNGEVVFLGEDNHSVTAVTAQDSCGVEANCLYYLSFKQHCI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10000289
[exp]
0 1
AT5G50600 ATHSD1 hydroxysteroid dehydrogenase 1... Lus10031448
[exp]
10.3 0.7123
AT5G55930 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPT... Lus10004237
[exp]
12.5 0.6446
AT2G33280 Major facilitator superfamily ... Lus10004407
[exp]
16.4 0.6308
Lus10012394
[exp]
22.8 0.6375
AT3G04690 ANX1 ANXUR1, Malectin/receptor-like... Lus10021998
[exp]
26.2 0.6092
Lus10010102
[exp]
29.6 0.6646
Lus10008514
[exp]
37.7 0.5884
AT3G26040 HXXXD-type acyl-transferase fa... Lus10004438
[exp]
38.2 0.5812
AT1G16445 S-adenosyl-L-methionine-depend... Lus10031751
[exp]
48.1 0.5837
AT3G16180 Major facilitator superfamily ... Lus10009506
[exp]
54.1 0.5694

Lus10000289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.