Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036312 [exp] 294 / 2e-91 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10042671 [exp] 274 / 2e-88 ND 41 / 0.001 Lus10006887 [exp] 176 / 3e-47 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10034056 [exp] 171 / 7e-47 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10010883 [exp] 163 / 9e-46 ND / Lus10003025 [exp] 144 / 2e-37 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10020633 [exp] 135 / 3e-36 ND / Lus10027612 [exp] 137 / 4e-34 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030315 [exp] 132 / 2e-32 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G165480 [exp] 45 / 0.0001 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000293 pacid=23153214 polypeptide=Lus10000293 locus=Lus10000293.g ID=Lus10000293.BGIv1.0 annot-version=v1.0 ATGGTGCATGGACATTGTCTTCCACCATGTTTGGAGAGTTATGTTGAACGGGTAGGGAACCATTTGAAGGGCGTCTACTGCGCTGGACTGGAGGAGGTGT ACCAATCGGTTCTGGAGCCGCTGACTACGCCTCCATTCCCTGCTGAATCGTTGCACTATATTGAATTTGAGGCTCTTTCTGGTCGGCTTCACCCCCCATA TCCATACCTCACAGACTTTGTGGGGAAGGTTGTCGTTGCTGGCGAGCCAGATCATTTTCAACGTGGTCATGCAATGGGTCCCCTCCAAGAACTGACGGTG GTTAATGAGAGTTACGTGGCTGCTCCGCGTCGAGTTTCCTATGTTCCGCCAAAGTTCGCCACTTCGGAAAAGTTGCATAGCCATATTCGTGATTCATATC GGACAATTCGTGAACTTGTGGACCTTTACTCCGCTGGTGGAGATTCGGATCCACACTATCAGTGTGCTGCGATGATCAAGGGGTTTGATACAAACACACC ATGGTCATATGTTGCATGCCCTCATTGCTTCAAGGCCGTTGCTCCTAACCATACCAATTTCTGGTGCTCAATCCATGAAACGATTCTTGCTGCAGATGTT CAGTACAAGTTGGGAGGAATGCCAGAGGATTCAACTATACACTTCATGTGTGTGCCCATCAATGTTGTATTGTTCATGATAGTGTTTTGCTTCCTTCATT GCGATACATCATTGCTGAAATGGCCACATTTTCTGTATCGCCTAAAGCTTATGGTTTCAGATTCAACTGCTGAGGCATTGTTCGTTTTGCTTGGTATGAC GGCTGAAAGAATTCTCCCCATCCCCGCTGCTGAGTTGGTACGTGCATATCCTAATGATCTTGACCAATTCCCACCAGCAATTGCATTCTTAGTAGGACAA AATGTTGAGTTTGAAGTCCAACTGCCAAAGTTTAGCCACTCAAATCCTTTTGGAGATTTTAAGGTTTGCAATATCTCGGGTTTGGTTACTCCCCGTCGTC AGTCAGTTGCTCCGCCTCCCCCTCCAACCCTAATTAGCCCGTTGAGTTCCCCAAGTACTCACAACACACCTATGCCCGGTGATCCTGAGTATGTTGCCCC AGTGCCAACTTATGTCTCGCCTTCAACATCTCCAACCACTATTTCTGAAGACCAAGTCTCTTTGGTTAGTGCTGCTCACAAAGATGAGGAAACTTCACCA TCATCCAAAACGAAAAAACAATCCAAGCTGCCGAAGACAAAATCAACTCCTGCAAGGAAGACTTCTTCAAAGCTGGCAGCCAAGACTAAAGGAACCCCGG CTTCCAAGCCAGTTACAAGAAATACCAGCAGTCAAATCCTGGCTTCATCTGTGTTCGTGCCTGCATCGTCTCCAGCATACAGCTCTTCGAAATCCAAATT AACTCTCCCTTTGGCAAAGGTTAAGCTGGAAAAACTCGAAACATCTTCTGCATTCATTCTCAACACGCCAGATTCACCGGGTAGAAAGGAAATGGACCCA GCACTTGGCCAAGGCAAGCGCAAGCCAACAAAGAAACGCCTTTTCGATGAATGA
AA sequence Show only first row Show all	>Lus10000293 pacid=23153214 polypeptide=Lus10000293 locus=Lus10000293.g ID=Lus10000293.BGIv1.0 annot-version=v1.0 MVHGHCLPPCLESYVERVGNHLKGVYCAGLEEVYQSVLEPLTTPPFPAESLHYIEFEALSGRLHPPYPYLTDFVGKVVVAGEPDHFQRGHAMGPLQELTV VNESYVAAPRRVSYVPPKFATSEKLHSHIRDSYRTIRELVDLYSAGGDSDPHYQCAAMIKGFDTNTPWSYVACPHCFKAVAPNHTNFWCSIHETILAADV QYKLGGMPEDSTIHFMCVPINVVLFMIVFCFLHCDTSLLKWPHFLYRLKLMVSDSTAEALFVLLGMTAERILPIPAAELVRAYPNDLDQFPPAIAFLVGQ NVEFEVQLPKFSHSNPFGDFKVCNISGLVTPRRQSVAPPPPPTLISPLSSPSTHNTPMPGDPEYVAPVPTYVSPSTSPTTISEDQVSLVSAAHKDEETSP SSKTKKQSKLPKTKSTPARKTSSKLAAKTKGTPASKPVTRNTSSQILASSVFVPASSPAYSSSKSKLTLPLAKVKLEKLETSSAFILNTPDSPGRKEMDP ALGQGKRKPTKKRLFDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000293 [exp]	0	1
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	2.4	0.6687
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10028309 [exp]	4.0	0.6889
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	9.9	0.6550
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10039940 [exp]	10.2	0.6471
AT3G52260			Pseudouridine synthase family ...		Lus10040385 [exp]	10.3	0.6802
AT4G09940			P-loop containing nucleoside t...		Lus10028023 [exp]	14.4	0.6678
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	22.0	0.6401
AT3G20240			Mitochondrial substrate carrie...		Lus10034806 [exp]	26.0	0.6663
AT2G25920			unknown protein		Lus10001457 [exp]	37.0	0.6112
AT2G27410	B3		Domain of unknown function (DU...		Lus10035393 [exp]	40.1	0.6101

Compare expression of checked genes

Lus10000293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.