Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41880 172 / 1e-49 POLA4, POLA3 DNA primases;DNA primases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006088 [exp] 215 / 8e-68 AT5G41880 284 / 2e-93 DNA primases;DNA primases (.1) Lus10009444 [exp] 214 / 4e-62 AT1G35530 953 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Lus10006089 [exp] 98 / 2e-22 AT1G35530 251 / 2e-72 DEAD/DEAH box RNA helicase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G104700 [exp] 202 / 2e-61 AT5G41880 651 / 0.0 DNA primases;DNA primases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0243 [flax] [poplar] AEP PF01896 [flax] [poplar] DNA_primase_S DNA primase small subunit
Representative CDS sequence Show only first row Show all	>Lus10000294 pacid=23165506 polypeptide=Lus10000294 locus=Lus10000294.g ID=Lus10000294.BGIv1.0 annot-version=v1.0 ATGTTGGTCTCTTTGATCAATCCGGTGAGAGCCATCGGCGGCGACATCGATTTATCTAAACTAAGGGCGACAACTTGTTGTCCAAAGGTATCAGTGGTGG GAATGGTGGTGATGGAGATTGTGGCGAGTAAGGTTGAGGTGATTGTCGTTGACGTGGTTGGCGGGGTTGGAGGGCTTATTATAATCGTGATGAAGTCCAT GGAGAGGACAGCGTCGGAGGAATCGAGTTCGCTCTCTCCTGCTGTCAATCCTTCATCAGGAAGCTCGATTCAATCTGCGCAGCACGCAATCATAGAGATG GCGATCGAAGAAGCTGCTAATGGGAGGGATGACATGGCAATCGATGGGCAGAATGCTGACCAGGCCATCGAAAGTGGATTCAACCCGAATTTCCTCAGAC TGTACTACGATGACTTTGGTTTCAACCACATTCTCTGGGTGTACAGTGGCCGACGTGGTGTGCATTGTTGGGTTTCTGATGGAAAAGCAAAAAGGTTGAC TAATGAACAGAGAGCATCACTTGCTGATTACTTCGGCGTATACAAGGGTAGTGAGAACAGTAACAAAAAAGTTCTTTGTCTGGCCATGGTCTTCATCGTT TCTTGGTCTGTTGCTGCGGAGCTTCGAGGTAGGTGCCAGAACAGTAAAAGGTCGTCTGGTTCGAGAGACAACATTAACGCTGTCTCCAAACACATGAACC ACTTGCTGAAGGCACCCTTCCGTGTCCATCCAAATTCCGGTAAGACGTGTGTTTGTGTACCGATAGACCCAGCCCGGTGCCACGAATTCGATCCTACAGC AGTCCTCTTGCTGCTTCACCATATTATAAACTGGGACAGGACCTCACTCAGAGAATCTGTCAGGTTTTTCACATCCTCGTTCTTGGAACCTCTTCTGAAA TCTTGCAAGTATGAGATGGAGGGTGCGTACAATTCGAAACTGCAGCATTCGAAGAACTGTCTTGAGTTGGTAGTCTTCTTCCCAAATGTCATACGTATTT GTTATGTGTACATATGA
AA sequence Show only first row Show all	>Lus10000294 pacid=23165506 polypeptide=Lus10000294 locus=Lus10000294.g ID=Lus10000294.BGIv1.0 annot-version=v1.0 MLVSLINPVRAIGGDIDLSKLRATTCCPKVSVVGMVVMEIVASKVEVIVVDVVGGVGGLIIIVMKSMERTASEESSSLSPAVNPSSGSSIQSAQHAIIEM AIEEAANGRDDMAIDGQNADQAIESGFNPNFLRLYYDDFGFNHILWVYSGRRGVHCWVSDGKAKRLTNEQRASLADYFGVYKGSENSNKKVLCLAMVFIV SWSVAAELRGRCQNSKRSSGSRDNINAVSKHMNHLLKAPFRVHPNSGKTCVCVPIDPARCHEFDPTAVLLLLHHIINWDRTSLRESVRFFTSSFLEPLLK SCKYEMEGAYNSKLQHSKNCLELVVFFPNVIRICYVYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10000294 [exp]	0	1
AT1G07270			Cell division control, Cdc6 (....		Lus10000427 [exp]	2.0	0.8502
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10003520 [exp]	15.9	0.8301
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	25.5	0.8076
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	49.8	0.7665
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	63.0	0.7774
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	66.7	0.7911
AT1G03970	bZIP	GBF4	G-box binding factor 4 (.1)		Lus10042810 [exp]	76.2	0.7667
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10009484 [exp]	103.0	0.7469
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	108.9	0.7166
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10025564 [exp]	128.8	0.7384

Compare expression of checked genes

Lus10000294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.