Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27040 514 / 1e-175 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21150 472 / 2e-159 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT5G21030 410 / 4e-136 PAZ domain-containing protein / piwi domain-containing protein (.1) AT2G32940 311 / 1e-97 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G43810 162 / 2e-43 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 159 / 3e-42 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 136 / 2e-34 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 95 / 1e-20 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 77 / 1e-14 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 74 / 1e-13 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025537 [exp] 649 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10026750 [exp] 567 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10015155 [exp] 399 / 3e-131 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10035331 [exp] 397 / 3e-130 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 279 / 3e-85 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10041978 [exp] 164 / 6e-44 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 164 / 1e-43 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 162 / 2e-43 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 160 / 2e-42 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219700 [exp] 573 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 530 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 523 / 7e-179 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 486 / 1e-164 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.014G159400 [exp] 400 / 2e-131 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Potri.015G029000 [exp] 173 / 4e-47 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 170 / 5e-46 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 164 / 7e-44 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 162 / 2e-43 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 159 / 3e-42 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0638 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10000295 pacid=23158592 polypeptide=Lus10000295 locus=Lus10000295.g ID=Lus10000295.BGIv1.0 annot-version=v1.0 ATGGCTAGGCGTGGCTCTGGATCCAAAGGACAGAAGATAACTCTGCTGACCATTCACTTCAAAGCGTCCAACATGGATGTCGATTTCTACCACTATAGTG TTGCTCTATTGTATGAAGATGTTCGCCCTGAGGAGGGTATAGGTGTAGGGCGTAAAGTCCTCGACAAAGTACATCAGACTTACACTGGTGAATTAGGTGG AAAAGATTTTGCCTATGATGGTGAGAAGAGTTTGTTCACTATAGGACAGCTACCCTTGAACAAGCATGACTTCAATGTAGTTCTGGAAGACTTTACCTCT AACAGAAACAGCCCTGATGGACATGGTACGGAAAATGAGACTGATGGCAAGAGGTTGCGACGTCCTTACAACTGCAAGTCATTCATAGTTCAGCTAAATT TTGCTGCCAAAATACCTATGAAAGCAATTGCAAGTGCATTGAAAGGGATAGAGACTGAAAATTCCCAAGAAGCATTGCGGGTGTTAGATATCATACTAAG GCAACATGCAGCAAAACAGGGCTGCCTCCTGGTACGCCAGTCATTTTTCCGTAATGACCCCAAGAACTTTTGGGACTTCAGTGGTGGGGTTTTAGGTTGC AGAGGCTTCCACTCCAGTTTTCGAACTACCCAAGGAGGATTGTCTTTGAACATCGATGTCTCAACCACCATGATTATTCAGCCTGGGCCTGTGGTGGATT TTCTATTCAGTAAACAGAATGTCAGAGATCCGTTCAGTCTGGATTTGGGCAAGGTAGCTGACATCTGCTTAAAGAGGTTGAAAAATCTGAGGATTAAAGT TAGCCCGACCAACCAAGAGTACAAGATAACAGGATTAAGTGACCAACCTTGGAAAGAGCAAATAGGCGAGGCTGATCCTATTCAAGTAACTGTGTATGAC TACTTTGTCAACCACCGGAGCATGGATTTGCGCTATTCAGGGGATCTACCTTGCATAAATGTTGGGAAGCCTAAGTGTCTGACATACATTCATTTGGAGC TATGCTCCTTGCTTTCTCTTCAAACGTACACAAAGGCTCTGACCAATTTCCAGCGTTCTTCACTAGTGGAGAAATCCTGGCAAAACCCACTAGAGAGGAT GAGTGTTTTGTCTAATTCTCTTAAAACAAGCAAATATGAAGCAGAACCGATGCTGCGCTCATATGGTATTTCTATCTGCCCCAAAGGTATTGATTCTCAT AAAGCACAGATTCTGTTTTTCTTGAATAATTTGAGCATATACATTCTTTCTGGGTATTTTTTGTAG
AA sequence Show only first row Show all	>Lus10000295 pacid=23158592 polypeptide=Lus10000295 locus=Lus10000295.g ID=Lus10000295.BGIv1.0 annot-version=v1.0 MARRGSGSKGQKITLLTIHFKASNMDVDFYHYSVALLYEDVRPEEGIGVGRKVLDKVHQTYTGELGGKDFAYDGEKSLFTIGQLPLNKHDFNVVLEDFTS NRNSPDGHGTENETDGKRLRRPYNCKSFIVQLNFAAKIPMKAIASALKGIETENSQEALRVLDIILRQHAAKQGCLLVRQSFFRNDPKNFWDFSGGVLGC RGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLFSKQNVRDPFSLDLGKVADICLKRLKNLRIKVSPTNQEYKITGLSDQPWKEQIGEADPIQVTVYD YFVNHRSMDLRYSGDLPCINVGKPKCLTYIHLELCSLLSLQTYTKALTNFQRSSLVEKSWQNPLERMSVLSNSLKTSKYEAEPMLRSYGISICPKGIDSH KAQILFFLNNLSIYILSGYFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	0	1
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	2.2	0.7407
AT3G17740			unknown protein		Lus10031899 [exp]	4.9	0.7824
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	5.2	0.7181
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10019079 [exp]	5.5	0.7376
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	7.3	0.7930
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	7.7	0.6842
AT3G14470			NB-ARC domain-containing disea...		Lus10022351 [exp]	11.1	0.7685
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	12.0	0.7467
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	13.5	0.6256
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10040162 [exp]	18.7	0.6676

Compare expression of checked genes

Lus10000295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.