Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005508 [exp] 253 / 2e-87 ND / Lus10007455 [exp] 188 / 2e-56 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029852 [exp] 78 / 8e-17 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05064 [flax] [poplar] Nsp1_C Nsp1-like C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10000296 pacid=23180542 polypeptide=Lus10000296 locus=Lus10000296.g ID=Lus10000296.BGIv1.0 annot-version=v1.0 ATGAGAAGAATAAGGAAGAGGAAGATAAGGACAAGAATTTTAAGGCAGAGGTCACTGGGATCCGCATGTACTATGGTTCTGCTATGCAAACCGATGAATT TTCTACCTCCAGAACACGTATCCAGGCTGCTTCCTCCTTCTGGCGTGGGTTCTTCTTCCAAAGATGAGAATGCGCAGCCTATGCAAGAAGCATCTGAAGA ACAACGAGTAGGGGATGAAGGGAATTCGTCTGGGAATATGGAGAAAGACGTTGTTGACATGATTGACCGACTTTCGAGTTTGAGTTGTGATGAAAATGAA ATGCCAGAGAGTGTGGTAGCTTGGTTGGCAGAGCTGGAACAAAGCATGAAGGTGAAGACTGCTCAAGCTGAAAACTTGAAGGAGGTGGATGCAAGGTTGA CAGCTGGAGGATTGGAGCTGAGTTTTCTGGACGGAGAATTGTCAAGGATTTTGGTGGAGGAAGAGGAAATAGAGGCTGAGCTTCAACGTTTGAAGAACAA GAAGAGTGAGATAGACGGTGCAGCATTAGGAACCAATTCACAGTGA
AA sequence Show only first row Show all	>Lus10000296 pacid=23180542 polypeptide=Lus10000296 locus=Lus10000296.g ID=Lus10000296.BGIv1.0 annot-version=v1.0 MRRIRKRKIRTRILRQRSLGSACTMVLLCKPMNFLPPEHVSRLLPPSGVGSSSKDENAQPMQEASEEQRVGDEGNSSGNMEKDVVDMIDRLSSLSCDENE MPESVVAWLAELEQSMKVKTAQAENLKEVDARLTAGGLELSFLDGELSRILVEEEEIEAELQRLKNKKSEIDGAALGTNSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000296 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	8.6	0.7842
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	27.5	0.7687
					Lus10029181 [exp]	38.8	0.7325
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	51.7	0.7333
					Lus10014682 [exp]	114.3	0.7195
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10006908 [exp]	161.9	0.6903
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Lus10034357 [exp]	167.9	0.6806
					Lus10032744 [exp]	245.6	0.6735
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	288.5	0.6626

Compare expression of checked genes

Lus10000296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.