Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007186 [exp] 166 / 1e-55 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G224210 [exp] 115 / 6e-35 ND / Potri.014G185804 [exp] 115 / 6e-35 ND / Potri.014G186452 [exp] 115 / 6e-35 ND / Potri.014G185588 [exp] 115 / 6e-35 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000298 pacid=23147829 polypeptide=Lus10000298 locus=Lus10000298.g ID=Lus10000298.BGIv1.0 annot-version=v1.0 ATGGAACAATGTAGGCAAGGGAAGTCGGCAAAATGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGGCTGGGCCCGGGGGTCCCAGTCCCGAACCC GTCGGCTGTCGGCGGACTTCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCTGCGTGCCGGCCGGGGGACGGGCTGGGAACGGTCCCTTCACGGGGGCCT TCCCCGGGCGTCGAACAGCCAGCTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAA
AA sequence Show only first row Show all	>Lus10000298 pacid=23147829 polypeptide=Lus10000298 locus=Lus10000298.g ID=Lus10000298.BGIv1.0 annot-version=v1.0 MEQCRQGKSAKWIRNFGKRIGSEGWARGSQSRTRRLSADFSSCSRGESGSLRAGRGTGWERSLHGGLPRASNSQLRTGTDKGNPTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000298 [exp]	0	1
					Lus10007186 [exp]	1.0	0.9935
					Lus10008011 [exp]	1.4	0.9761
					Lus10039450 [exp]	2.8	0.9325
					Lus10001550 [exp]	3.9	0.9381
					Lus10007187 [exp]	11.4	0.8592
					Lus10030678 [exp]	15.7	0.8298
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	17.5	0.8941
AT1G11340			S-locus lectin protein kinase ...		Lus10002717 [exp]	18.2	0.8020
					Lus10017955 [exp]	19.4	0.8925
					Lus10018837 [exp]	19.6	0.8886

Compare expression of checked genes

Lus10000298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.