Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002716 [exp] 169 / 2e-54 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000300 pacid=23147831 polypeptide=Lus10000300 locus=Lus10000300.g ID=Lus10000300.BGIv1.0 annot-version=v1.0 ATGATTCCAACGACTGCGTCTGCCTTCGCTTGGTGCTCTGGCATCGAGCGAGGCGGATGCATCGAACGTGGGAATGCTACCTGGTTGATCCTGCCAGTAG TCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGATTTTGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATAATTAACAGGGACAGTCGAGGGCA TTCGTATTTCATAGTCAGAGATACTGTCATAGTCTCAACCATAAACGATGTCGACCAGGGATCGGCGGATGTTGCTTTTTGGACTCCGCCGGCACCTTAT GAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTT AA
AA sequence Show only first row Show all	>Lus10000300 pacid=23147831 polypeptide=Lus10000300 locus=Lus10000300.g ID=Lus10000300.BGIv1.0 annot-version=v1.0 MIPTTASAFAWCSGIERGGCIERGNATWLILPVVICLSQRLSHACDFGPIVLAFGIGVIINRDSRGHSYFIVRDTVIVSTINDVDQGSADVAFWTPPAPY EKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000300 [exp]	0	1
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10011056 [exp]	2.6	0.9357
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10035914 [exp]	8.9	0.9023
AT3G19910			RING/U-box superfamily protein...		Lus10025691 [exp]	13.1	0.8662
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Lus10025750 [exp]	13.6	0.9330
AT3G53630			unknown protein		Lus10025312 [exp]	15.4	0.9167
AT5G41761			unknown protein		Lus10012634 [exp]	18.0	0.9233
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10018383 [exp]	18.2	0.9310
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10015554 [exp]	21.5	0.8548
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	26.7	0.9187
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	28.0	0.9309

Compare expression of checked genes

Lus10000300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.