Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39280 286 / 9e-98 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT5G39300 281 / 6e-96 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1) AT5G39270 265 / 1e-89 ATHEXPALPHA1.15, ATEXP22, ATEXPA22 EXPANSIN 22, expansin A22 (.1) AT5G39290 264 / 4e-89 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1) AT5G02260 259 / 2e-87 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 251 / 3e-84 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G55500 250 / 8e-84 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 250 / 9e-84 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G05290 249 / 2e-83 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G39310 249 / 9e-83 ATHEXPALPHA1.19, ATEXP24, ATEXPA24 EXPANSIN 24, expansin A24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012747 [exp] 356 / 2e-125 AT5G39280 317 / 1e-109 EXPANSIN 23, expansin A23 (.1) Lus10023407 [exp] 256 / 6e-86 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 254 / 3e-85 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10040801 [exp] 247 / 1e-82 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 247 / 2e-82 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10037164 [exp] 243 / 1e-80 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 242 / 2e-80 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 241 / 3e-80 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10026614 [exp] 240 / 7e-80 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092700 [exp] 274 / 3e-93 AT5G39280 325 / 6e-113 EXPANSIN 23, expansin A23 (.1) Potri.008G057100 [exp] 254 / 4e-85 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 253 / 9e-85 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G031800 [exp] 252 / 2e-84 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 251 / 4e-84 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.006G086100 [exp] 248 / 5e-83 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.013G060800 [exp] 247 / 7e-83 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.016G135200 [exp] 245 / 7e-82 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 242 / 9e-81 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.006G108000 [exp] 240 / 9e-80 AT2G40610 379 / 2e-134 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10000304 pacid=23149482 polypeptide=Lus10000304 locus=Lus10000304.g ID=Lus10000304.BGIv1.0 annot-version=v1.0 ATGGGTAGCAAGTTAGACACGATTATTCCGAACGACGATTGGTCCACGTGGCAAGATGCTCATGCAACGTTCTACGGCGATATGTCCGGCAGAGAAACCA TGCAGGGAGCATGCGGGTACGGCGACCTATTCAAGCAAGGATACGGACTGCAAACAGCAGCACTTAGCACCGCACTATTCAACAACGGCTACGCCTGCGG CGGATGCTACGAGATCAAATGCATCAACGATCCCGACTGGAAATTCTGCTACCCGGGAGTTGCCCCAATCCAAATCACGGCAACCAACTTCTGTCCACCA AACCCCGCCGGTGGCGCGTGCAATGTACCGGCGAAACACTTCGACCTCTCGATGCCCATGTTCCTCAAGATGGCTCCGTACAAGGCGGGGATCGTGCACG TCCTGTACCGTCGAATTCGGTGCCAGAAGCAAGGCGGCGTGAAGTTCCAGATCACCGGGAACCCCAACTTCAACTTGGTGCTCGTTTACAACGTCGGGGG CGTCGGCGATGTGAAGAACGTGAGGGTTAAAGGGTCCAATACCGGCGGGTGGGTCCAGATGCAGAAGAATTGGGGACAGAACTGGCAGAGTAATGTCGTT TTGCGTGGTCAGATGTTGTCGTTTCAGGTGGTTACTAGTGATGGTGCTTATAAGGTGTTTAATAATGTTGTTCCTGGGAATTGGCAGTTTGGGCAGACTT TTGATGGCAAGATCAACTTCTAA
AA sequence Show only first row Show all	>Lus10000304 pacid=23149482 polypeptide=Lus10000304 locus=Lus10000304.g ID=Lus10000304.BGIv1.0 annot-version=v1.0 MGSKLDTIIPNDDWSTWQDAHATFYGDMSGRETMQGACGYGDLFKQGYGLQTAALSTALFNNGYACGGCYEIKCINDPDWKFCYPGVAPIQITATNFCPP NPAGGACNVPAKHFDLSMPMFLKMAPYKAGIVHVLYRRIRCQKQGGVKFQITGNPNFNLVLVYNVGGVGDVKNVRVKGSNTGGWVQMQKNWGQNWQSNVV LRGQMLSFQVVTSDGAYKVFNNVVPGNWQFGQTFDGKINF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39280		ATEXP23, ATHEXP...	EXPANSIN 23, expansin A23 (.1)		Lus10000304 [exp]	0	1

Compare expression of checked genes

Lus10000304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.