Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39300 78 / 2e-19 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1) AT5G39280 77 / 2e-19 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT5G39290 76 / 1e-18 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1) AT5G39260 75 / 2e-18 ATHEXPALPHA1.20, ATEXP21, ATEXPA21 EXPANSIN 21, expansin A21 (.1) AT5G05290 74 / 3e-18 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G02260 74 / 3e-18 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G39270 74 / 4e-18 ATHEXPALPHA1.15, ATEXP22, ATEXPA22 EXPANSIN 22, expansin A22 (.1) AT1G20190 72 / 3e-17 ATHEXPALPHA1.14, ATEXP11, ATEXPA11 EXPANSIN 11, expansin 11 (.1) AT4G01630 72 / 3e-17 ATEXP17, ATHEXPALPHA1.13, ATEXPA17 EXPANSIN 17, expansin A17 (.1) AT5G56320 72 / 4e-17 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000304 [exp] 105 / 3e-30 AT5G39280 311 / 8e-108 EXPANSIN 23, expansin A23 (.1) Lus10012747 [exp] 91 / 3e-24 AT5G39280 317 / 1e-109 EXPANSIN 23, expansin A23 (.1) Lus10034548 [exp] 79 / 1e-19 AT1G20190 400 / 1e-142 EXPANSIN 11, expansin 11 (.1) Lus10021845 [exp] 77 / 4e-19 AT1G20190 397 / 1e-141 EXPANSIN 11, expansin 11 (.1) Lus10019088 [exp] 67 / 5e-17 AT1G69530 94 / 1e-25 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 71 / 9e-17 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10020257 [exp] 71 / 2e-16 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1) Lus10017256 [exp] 70 / 2e-16 AT1G20190 378 / 5e-134 EXPANSIN 11, expansin 11 (.1) Lus10026614 [exp] 69 / 3e-16 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057500 [exp] 72 / 2e-17 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 72 / 3e-17 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.003G223501 [exp] 69 / 3e-17 AT5G56320 192 / 4e-63 EXPANSIN 14, expansin A14 (.1) Potri.002G017900 [exp] 71 / 6e-17 AT1G20190 408 / 9e-146 EXPANSIN 11, expansin 11 (.1) Potri.001G001100 [exp] 71 / 6e-17 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G154700 [exp] 71 / 6e-17 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.006G108000 [exp] 71 / 7e-17 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.013G060800 [exp] 71 / 9e-17 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.017G092700 [exp] 70 / 1e-16 AT5G39280 325 / 6e-113 EXPANSIN 23, expansin A23 (.1) Potri.008G057100 [exp] 69 / 2e-16 AT2G39700 459 / 6e-166 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000305 pacid=23149481 polypeptide=Lus10000305 locus=Lus10000305.g ID=Lus10000305.BGIv1.0 annot-version=v1.0 ATGTCTAGGAATTGGGGTCAGAATTGGCAGAGTAATGTTGTTTTGCGTGGTCAGACGTTGTCGTTTCAGGTGGTTACTAGCGATGGTGCTTATAAGGTGT TTAATAATGTTGTTCCTGGGAATTGGCAGTTTGGGCAGTCTTTTGATGGCAAGATCAACTTCTAG
AA sequence Show only first row Show all	>Lus10000305 pacid=23149481 polypeptide=Lus10000305 locus=Lus10000305.g ID=Lus10000305.BGIv1.0 annot-version=v1.0 MSRNWGQNWQSNVVLRGQTLSFQVVTSDGAYKVFNNVVPGNWQFGQSFDGKINF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39300		ATHEXPALPHA1.18...	EXPANSIN 25, expansin A25 (.1)		Lus10000305 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010469 [exp]	2.2	0.9029
					Lus10016118 [exp]	3.2	0.9029
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10004323 [exp]	3.9	0.8676
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	4.5	0.8280
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10027327 [exp]	5.5	0.8225
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	6.9	0.6984
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10033616 [exp]	7.3	0.7153
					Lus10026491 [exp]	8.4	0.6796
AT2G14378			Protein of unknown function (D...		Lus10019428 [exp]	10.4	0.6152
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014354 [exp]	16.5	0.4934

Compare expression of checked genes

Lus10000305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.