Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38530 779 / 0 TSBtype2 tryptophan synthase beta type 2 (.1) AT5G54810 120 / 3e-29 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT4G27070 120 / 4e-29 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G28237 116 / 6e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012746 [exp] 115 / 2e-31 AT5G38530 107 / 3e-29 tryptophan synthase beta type 2 (.1) Lus10043059 [exp] 125 / 8e-31 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10011154 [exp] 122 / 8e-30 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10018358 [exp] 110 / 6e-26 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10007651 [exp] 63 / 3e-10 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G109600 [exp] 808 / 0 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1) Potri.011G136000 [exp] 121 / 1e-29 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) Potri.001G420300 [exp] 119 / 5e-29 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.011G024900 [exp] 107 / 6e-25 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10000306 pacid=23149483 polypeptide=Lus10000306 locus=Lus10000306.g ID=Lus10000306.BGIv1.0 annot-version=v1.0 ATGCCTGTTGCTTCAGTCAACTCCTATCTCTGCAGCAACACATCAAATCAAAGCTTACCAACTAAAAAAAGCTTTGAATCCATGGCGGCTGCTCCTTTCA CAGTAAACCGACCGCTTCCCTTTTCCAGAACCGCTGCGTCAATCGGAAACCCACAAAATGTGAACAAGCAATGGCGGCGCGTGTGCTGCAGAGCATCTTC GGTCGAGATTCCTAGCCGGTGGTACAACCTTGTCGCGGATCTTCCCGTTAAGCCTCCGCCATCATTGCATCCCAAGACACTGAACCCCATAAAGCCTGAA GATTTGTCTCCTCTGTTGGCAGATGAATTGATCAAGCAGGAAGCTTGTGCTGACAAGTTCGTTGATATCCCTGATGAAGTCATCGACATTTACCGCCTCT GGCGCCCAACTCCTTTGATTAGAGCAAGGAGATTGGAGAAGGTGCTTGACACACCAGCAAAGATATACTACAAATACGAAGGAGGAAGCCCTGCAGGATC CCACAAACCAAACACTGCAATTCCACAAGTGTACTACAATGCCAAACAAGGCATCAAGAAACTCGTCACAGAAACTGGAGCCGGCCAGTGGGGGAGCTCC CTCGCCTTTGCTTGCAGCCTCTTCGGTCTCGACTGCGAGGTGTGGCAGGTTCGAGCTTCATACGACCAGAAGCCATACCGCAGGCTGATGATGGAGACCT GGGGAGCCAAAGTGCACCCTTCACCCTCCACTGAGACATCATCAGGAAGGAAAATTCTCGAAATGGACCCCACGAGCCCCGGGAGCTTAGGGATAGCCAT CTCGGAAGCTGTTGAAATTGCAGTTGGGGACCCCGGCACAAAATACTGCTTAGGGAGTGTACTGAATCATGTGTTGTTGCACCAGACTGTTATAGGAGAG GAGTGTCTCAAACAGATGGAAGCCATCGGCGAGACTCCCGATGTGATCATCGGGTGCACCGGTGGAGGATCGAATTTCGCGGGGCTTAGTTTCCCTTTCA TGAGGGAGAAGCTGGAAGGCAAGATCAACCCTGTGATTCGAGCAGTTGAGCCTACAGCGTGTCCTTCACTTACTAAAGGTGTTTACACTTATGACTATGG TGATACTGCTGGGATGACTCCATTGATGAAGATGCATACTTTGGGACATGACTTCATTCCTGACCCTATTCATGCTGGTGGCTTGAGGTACCACGGAATG GGACCTCTCATATCTCATGTCTATGAACAGGGATACATGGAAGCAATCTCCATTCCTCAAACAGAGTGCTTCAAAGGTGCCATACAATTTGCTAGAAGTG AAGGGCTGATACCTGCACCAGAGCCGACTCATGCAATCGCAGCCACCATCAGGGAAGCTCTCCACTGCAAGGAGACTGGTGAAGCTAAGGTTATTCTCAT GGCAATGTGTGGACATGGCCATTTTGATCTCGCAGCTTATGATAAGTACCTCAGAGGAGATATGGTTGATCTGAACTTTGACGAGGATAGAGTGCATGCA TCGTTGTTGAACCTTCCCCGAGTTGAAACTTGA
AA sequence Show only first row Show all	>Lus10000306 pacid=23149483 polypeptide=Lus10000306 locus=Lus10000306.g ID=Lus10000306.BGIv1.0 annot-version=v1.0 MPVASVNSYLCSNTSNQSLPTKKSFESMAAAPFTVNRPLPFSRTAASIGNPQNVNKQWRRVCCRASSVEIPSRWYNLVADLPVKPPPSLHPKTLNPIKPE DLSPLLADELIKQEACADKFVDIPDEVIDIYRLWRPTPLIRARRLEKVLDTPAKIYYKYEGGSPAGSHKPNTAIPQVYYNAKQGIKKLVTETGAGQWGSS LAFACSLFGLDCEVWQVRASYDQKPYRRLMMETWGAKVHPSPSTETSSGRKILEMDPTSPGSLGIAISEAVEIAVGDPGTKYCLGSVLNHVLLHQTVIGE ECLKQMEAIGETPDVIIGCTGGGSNFAGLSFPFMREKLEGKINPVIRAVEPTACPSLTKGVYTYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGM GPLISHVYEQGYMEAISIPQTECFKGAIQFARSEGLIPAPEPTHAIAATIREALHCKETGEAKVILMAMCGHGHFDLAAYDKYLRGDMVDLNFDEDRVHA SLLNLPRVET

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10029265 [exp]	1.0	0.8016
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	16.2	0.6520
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	17.8	0.7216
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	18.2	0.7359
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	22.2	0.6497
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	23.8	0.7080
AT1G74600		OTP87	organelle transcript processin...		Lus10024220 [exp]	31.0	0.6670
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	36.4	0.6250
					Lus10025138 [exp]	48.4	0.6506
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10030158 [exp]	58.2	0.6835

Compare expression of checked genes

Lus10000306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.