Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 152 / 2e-42 UDP-Glycosyltransferase superfamily protein (.1) AT1G22370 119 / 4e-30 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22380 119 / 5e-30 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 114 / 2e-28 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 111 / 2e-27 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22400 110 / 7e-27 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 98 / 9e-23 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT5G59590 93 / 6e-21 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT2G36970 87 / 5e-19 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 87 / 6e-19 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015753 [exp] 380 / 2e-130 AT3G02100 297 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 231 / 2e-72 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 178 / 4e-52 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 175 / 5e-51 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 172 / 4e-50 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 171 / 2e-49 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 167 / 5e-48 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 167 / 1e-47 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 164 / 2e-46 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 167 / 4e-48 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 156 / 7e-44 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 142 / 1e-38 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 136 / 3e-36 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 127 / 3e-33 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 126 / 8e-33 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.016G020800 [exp] 122 / 2e-31 AT1G22340 446 / 1e-154 UDP-glucosyl transferase 85A7 (.1) Potri.006G023101 [exp] 122 / 4e-31 AT1G22360 516 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G022600 [exp] 121 / 7e-31 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G022500 [exp] 120 / 9e-31 AT1G22400 514 / 3e-180 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000309 pacid=23148027 polypeptide=Lus10000309 locus=Lus10000309.g ID=Lus10000309.BGIv1.0 annot-version=v1.0 ATGGCCAAGCAACCTCACGTCGTGGTTGTGCCACTCCCGGCACAAGGCCATCTACTCCCTCTCATGAAGTTGGCGCGCAAATTAGCCAACCGCGGCATCA ACGTCACAGTTATCAACTTGGAGACCATACACCGCAAAATCATTTGCACAATGCGAGACGATCGAGTGAGGCTCGTTGGAGTTCCTGACGGCTTGCAGCC CGATCACCGCCACGATCTGGTGAAGCAAATGGAGTGCCTTGAGAGAGTGATGCCGGGCCAGTTGAGGAGCCAGCTCGTTGTGGGGGAGGTGGTTTGTGTG ATTGCGGATGTGTCTCTGGCATGGGCGTTCCGTGAAACTAAGGCGATGGGGACCAAACCGGATGTTTTTTATACTGTTAGTGCTGCCACCTTGGCATTGT CGTTGGACATTCGACGCCTTCTTCAGCTTGGGATTTTAGATCACGATGACTCAAAAGAATTCAATGTGGGTTGCAGGAGTTGCATTAACCGGATCACCAA TTGGAATGGCGAAAGAAATACCAAGCTGGGAGGCCAACGATCTCCCCTGGAGCCATCCTGCATATCCCGACGAGCTGCGAAAACTGACATTCCAATCTTG CTGCCATGCGGAATGTTGTCAAAATTTCGACTACATTCTGGTGAATTCATCCCAGGACCTCGATCGATACCTAACGTATTCCCTATAGGCCCGCTGCAAA TCAGTACTGGCATCGACCCTGACGACGATACTGATAATTCAATCCTTGTAGGAAGCCTGTGGCCTGTAGACCAAACTTGCTTAACATGGCTCAACAAGCA AGATCAGGGCACAGTCATATACATCGCATTCGGGAGCATCGCGACCATAAGAAACCAGCAACAATTTGCTGAATTGGCAATGGCCCTGGAATTCACTGGC AATCCCTTTCTGTGGGTGGTCAGGCCTGGAGGATTCGGTACAACTATCAATACCTAG
AA sequence Show only first row Show all	>Lus10000309 pacid=23148027 polypeptide=Lus10000309 locus=Lus10000309.g ID=Lus10000309.BGIv1.0 annot-version=v1.0 MAKQPHVVVVPLPAQGHLLPLMKLARKLANRGINVTVINLETIHRKIICTMRDDRVRLVGVPDGLQPDHRHDLVKQMECLERVMPGQLRSQLVVGEVVCV IADVSLAWAFRETKAMGTKPDVFYTVSAATLALSLDIRRLLQLGILDHDDSKEFNVGCRSCINRITNWNGERNTKLGGQRSPLEPSCISRRAAKTDIPIL LPCGMLSKFRLHSGEFIPGPRSIPNVFPIGPLQISTGIDPDDDTDNSILVGSLWPVDQTCLTWLNKQDQGTVIYIAFGSIATIRNQQQFAELAMALEFTG NPFLWVVRPGGFGTTINT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10000309 [exp]	0	1
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10002592 [exp]	4.7	1.0000
					Lus10002413 [exp]	5.7	1.0000
					Lus10003843 [exp]	9.0	1.0000
					Lus10004351 [exp]	10.6	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10025919 [exp]	12.5	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	14.7	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	17.0	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	17.3	1.0000
					Lus10014857 [exp]	18.1	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10036331 [exp]	18.3	1.0000

Compare expression of checked genes

Lus10000309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.