Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 281 / 8e-95 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G50800 244 / 5e-80 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT3G48740 242 / 3e-79 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50790 238 / 7e-78 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G23660 237 / 2e-77 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT4G25010 230 / 1e-74 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 204 / 8e-65 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 181 / 5e-56 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 158 / 3e-47 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT5G53190 143 / 3e-41 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015754 [exp] 488 / 3e-176 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10003143 [exp] 369 / 2e-129 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10011335 [exp] 343 / 2e-119 AT5G13170 268 / 1e-89 senescence-associated gene 29 (.1) Lus10024770 [exp] 231 / 6e-75 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 229 / 2e-74 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10016742 [exp] 222 / 3e-71 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 220 / 1e-70 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10023249 [exp] 218 / 3e-70 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 217 / 6e-70 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166800 [exp] 276 / 7e-93 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 259 / 5e-86 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 248 / 7e-82 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101600 [exp] 223 / 8e-72 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 221 / 4e-71 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 220 / 9e-71 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 217 / 9e-70 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 205 / 2e-65 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G014400 [exp] 173 / 4e-53 AT4G15920 209 / 5e-68 Nodulin MtN3 family protein (.1) Potri.013G014500 [exp] 173 / 5e-53 AT4G15920 241 / 2e-80 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10000310 pacid=23148026 polypeptide=Lus10000310 locus=Lus10000310.g ID=Lus10000310.BGIv1.0 annot-version=v1.0 ATGCAGTCCCCTGGAGTTTTGGTCTTTGGTATTCTAGGTAATGTGATATCACTAATGGTGTTCTTGGCTCCCGTGCCGACGTTTTGGCGAATATACAAGA AGAAGACGAGCGAAGGGTACAAATCGATGCCGTATCTGATGGCATTGTTCAGCTCGATGATGTGGCTTTACTACTCACTCCTCAAAAAGCAAGACGCTTT ACTTCTTATGACCATCAACTCCTTTGGCTGTGTTATCGAGACTGTCTACATCGCTCTCTTCATCGCTTACGCCCCCAGAAACACCAGGGTGAGGTCGATT CTGTTGTTTGTGGGCTTGGATGTTGTGTTGTTCTCTGCCATCCTTGTGGTTGTGCAGTTACTGGTGAAAGCCCATCTGAGAGTTGACGTTTTGGGCTGGA TTTGCGTGGGCTTTGCCGTTAGTGTTTTCGCCGCACCGTTGACCGTTATGGCGACGGTGATTCGAACCAGGAGCGTGGAGTACATGCCGTTTTCGCTCTC GTTCTTCTTGACGTTGAGCGCAATGGTTTGGTTTGGGTATGGAGTGTTCACCCACGACCTTCGTGTCGCCTGCCCGAACGTTTTGGGCTTCGTGTTTGGG CTGGGCCAGATGGTCTTGTACGGTGTTTATCGGAACAAAAGTATAGTTGATCAAAAGGAGCAGAAGGAGAAGGAGCTTCAACTTGAACAACATGACGAGA ACAAGTTGGCGGTGAAGATGAAGAGCAACCAACGGAGGAGCGGGTTGGGGACGCCGGAGGTTCACCCGGTGGAAGTTCACGACGTACGCAATGACGGCTA CGATGATGACAATGAAGATGTTAGCGATGTGGACGTTACGAGTCCAGGTCGCGGAAACCAAGACGATTTACCTGTTTGA
AA sequence Show only first row Show all	>Lus10000310 pacid=23148026 polypeptide=Lus10000310 locus=Lus10000310.g ID=Lus10000310.BGIv1.0 annot-version=v1.0 MQSPGVLVFGILGNVISLMVFLAPVPTFWRIYKKKTSEGYKSMPYLMALFSSMMWLYYSLLKKQDALLLMTINSFGCVIETVYIALFIAYAPRNTRVRSI LLFVGLDVVLFSAILVVVQLLVKAHLRVDVLGWICVGFAVSVFAAPLTVMATVIRTRSVEYMPFSLSFFLTLSAMVWFGYGVFTHDLRVACPNVLGFVFG LGQMVLYGVYRNKSIVDQKEQKEKELQLEQHDENKLAVKMKSNQRRSGLGTPEVHPVEVHDVRNDGYDDDNEDVSDVDVTSPGRGNQDDLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	1.7	0.9165
AT5G10530			Concanavalin A-like lectin pro...		Lus10033783 [exp]	2.4	0.9021
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10015754 [exp]	3.5	0.8884
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	4.6	0.9002
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	5.3	0.8713
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	6.0	0.8779
AT2G28780			unknown protein		Lus10024409 [exp]	7.1	0.8869
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023698 [exp]	9.2	0.8139
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10000692 [exp]	9.2	0.8488
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	9.4	0.8687

Compare expression of checked genes

Lus10000310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.