Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46860 211 / 2e-69 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 187 / 6e-60 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT4G17730 162 / 1e-50 ATSYP23, SYP23 syntaxin of plants 23 (.1.2) AT1G32270 155 / 3e-46 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT1G61290 56 / 7e-10 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT3G52400 54 / 4e-09 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G11250 53 / 9e-09 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT3G05710 52 / 2e-08 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT3G11820 51 / 4e-08 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT5G26980 50 / 6e-08 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011064 [exp] 268 / 8e-85 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10040094 [exp] 246 / 3e-83 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 244 / 1e-82 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10018441 [exp] 57 / 3e-10 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 57 / 3e-10 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10020089 [exp] 56 / 1e-09 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10029864 [exp] 53 / 1e-08 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 51 / 6e-08 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10006735 [exp] 50 / 1e-07 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138500 [exp] 231 / 2e-77 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 222 / 7e-74 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 150 / 9e-46 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.005G020800 [exp] 59 / 9e-11 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.004G035400 [exp] 58 / 1e-10 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.013G011100 [exp] 57 / 5e-10 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.011G043700 [exp] 56 / 8e-10 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 56 / 1e-09 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.002G200400 [exp] 50 / 1e-07 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.007G123000 [exp] 45 / 5e-06 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10000311 pacid=23177777 polypeptide=Lus10000311 locus=Lus10000311.g ID=Lus10000311.BGIv1.0 annot-version=v1.0 ATGCAGCAAAGTAAGAAGATTGCAGACGCCAAGCTTGCGAAAGATTTCCAAGCAGTTCTGAAAGAGTTTCAGAAGGGTCAGCGTCTCTCCGCCGAGAGAG AAACTGCCTATTCTCCATTTGTTGCCAAGGCAAACCCTACATCCAGACAAGAGGTCGTGCTGTTGGACAATGAAATTTCTTTCAACGAGGCAATCATTGA GGAAAGAGAGCAAGGGATACACGAAATTTCACAGCAAATCGGTGAGGTGAACGAGATATTTAAGGATCTTGCAGTCCTTGTCCATGAACAAGGAACCATG ATCAACGATATCGGTTCCCACATCGATAATGCACATGCTGCAACTGCACAAGGGAAACAACATCTCGTCAAAGCTACGAAAACCCAAAAATCGAACTCGT CTCTGACCTGCTTACTCATGGTCATCTTCGCAACGGTGCTCCTTATCGTGATCGTAGTGCTCGCAGCCTAA
AA sequence Show only first row Show all	>Lus10000311 pacid=23177777 polypeptide=Lus10000311 locus=Lus10000311.g ID=Lus10000311.BGIv1.0 annot-version=v1.0 MQQSKKIADAKLAKDFQAVLKEFQKGQRLSAERETAYSPFVAKANPTSRQEVVLLDNEISFNEAIIEEREQGIHEISQQIGEVNEIFKDLAVLVHEQGTM INDIGSHIDNAHAATAQGKQHLVKATKTQKSNSSLTCLLMVIFATVLLIVIVVLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	0	1
AT5G53850			haloacid dehalogenase-like hyd...		Lus10015966 [exp]	2.4	0.9282
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	4.2	0.9261
AT1G01490			Heavy metal transport/detoxifi...		Lus10036395 [exp]	5.0	0.9149
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	6.5	0.9124
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	6.6	0.9177
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	8.9	0.9106
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	10.5	0.9065
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	11.8	0.9018
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	12.4	0.9208
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Lus10013462 [exp]	15.5	0.9138

Compare expression of checked genes

Lus10000311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.