Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33620 207 / 9e-64 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT5G46640 207 / 2e-63 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 206 / 1e-62 AT-hook AT hook motif DNA-binding family protein (.1) AT4G12080 187 / 6e-56 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 184 / 3e-54 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 172 / 2e-50 AT-hook AT hook motif DNA-binding family protein (.1.2) AT1G63470 168 / 1e-48 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 163 / 2e-46 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 160 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 155 / 5e-44 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011067 [exp] 518 / 0 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030962 [exp] 373 / 7e-128 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10040085 [exp] 372 / 1e-127 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10030269 [exp] 179 / 5e-53 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 179 / 5e-53 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030381 [exp] 176 / 8e-52 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 174 / 4e-51 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10031696 [exp] 174 / 6e-51 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 172 / 1e-50 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143500 [exp] 332 / 4e-112 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 318 / 1e-106 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 209 / 4e-64 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 199 / 2e-60 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G148600 [exp] 185 / 1e-55 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.005G256500 [exp] 187 / 2e-55 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G158200 [exp] 183 / 7e-55 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G070000 [exp] 182 / 2e-54 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 179 / 5e-53 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.001G115800 [exp] 176 / 5e-52 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10000315 pacid=23177775 polypeptide=Lus10000315 locus=Lus10000315.g ID=Lus10000315.BGIv1.0 annot-version=v1.0 ATGATGATGGGACCTACCCCGCCTTCCTCTTACCCTACCATGATCGTCCCACCTTCATCCGCCGCCGCAGCGGGGTTTCCGTTTAATTCCGTGATCATGC GCGCACCTCCTCATCAGCATCCACCACCTGAATCGAAGCCACCTCCGCCTTCCGACGGATCCAGCGGCCTCAACGCCGCTGGGTCATTCGACGAACCGTC GCCGACGTCCTCCGGGATGAGGTTCAGCATCGAGCCAGCTAAGAAGAAGCGAGGGAGACCGAGGAAGTACACTCCGGACGGCAACATTGCTCTCGGTTTG TCGACGACTCCGGTTTCTTCTTCGGGAGCAGCTGCTGCTGGTTCAGTAGGTCAGGGTGAGTCCGGCGGCGGAGGGGGAAGTGGTGGAGGGACGACTCCTG GTTTGTCGTTGTCTGATAATCAAGCTAAACGGCATAGAGGACGGCCGCCGAGCTCCGTGAAGAGGCAGCTTGATGCACTTGGAGGAGTTGGTGGGATAGG GTTTACTCCTCATGTGATCTTGGTGAATGCAGGAGAGGATATTGCTTCGAAGATTTATTCTTTCTCCCAGCAAGGGCCAAGAACCATATGCATTCTCTCA GCAAACGGTGCCATATCTAACGTTACCCTTTGCCAACCTGCAATGACGGGTGGAGCAGTGACATACGAGGGGCGATATGAAATTATTTCTTTATCGGGTT CCTTCTGGCTTTCTGATAATAACGGTAATAAGAGTAGAACTGGTGGTCTCAGCGTTTCACTGGCCGGGTCAGATGGTCGAGTTTTAGGTGGTGGAGTTGC TGGAATTTTAACGGCGGCATCACCAGTGCAGGTAATTGTGGGGAGCTTTGTTGCTGATACCAAAAAATCATCAGACCCAGAGGAATCAAAATCTGGGCCC TCGTCAAACCACATGTTGAATTTTGGTGCACCGATGTCTGAATCCAGCCCTCCTTTTCGAGCGGCTTCTAGCGAATCATCCGATGACCACGGTAGCAGTG CTCCCTTGAACCGCCCGGGTGCTGGCATCTACGCCAACTCAGGCCAACCACAACAACAACCCGTTCAAAGTATGCACATGTACCAAGTAATGGCTGGCCA AAATCCCCAGTGA
AA sequence Show only first row Show all	>Lus10000315 pacid=23177775 polypeptide=Lus10000315 locus=Lus10000315.g ID=Lus10000315.BGIv1.0 annot-version=v1.0 MMMGPTPPSSYPTMIVPPSSAAAAGFPFNSVIMRAPPHQHPPPESKPPPPSDGSSGLNAAGSFDEPSPTSSGMRFSIEPAKKKRGRPRKYTPDGNIALGL STTPVSSSGAAAAGSVGQGESGGGGGSGGGTTPGLSLSDNQAKRHRGRPPSSVKRQLDALGGVGGIGFTPHVILVNAGEDIASKIYSFSQQGPRTICILS ANGAISNVTLCQPAMTGGAVTYEGRYEIISLSGSFWLSDNNGNKSRTGGLSVSLAGSDGRVLGGGVAGILTAASPVQVIVGSFVADTKKSSDPEESKSGP SSNHMLNFGAPMSESSPPFRAASSESSDDHGSSAPLNRPGAGIYANSGQPQQQPVQSMHMYQVMAGQNPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	0	1
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	2.0	0.9227
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	4.9	0.9183
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	5.7	0.8693
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	6.0	0.9143
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	6.9	0.8771
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	7.4	0.9100
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	8.0	0.9127
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	9.0	0.8958
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004022 [exp]	9.4	0.8912
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	9.9	0.9022

Compare expression of checked genes

Lus10000315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.