Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01630 540 / 0 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1) AT4G00020 531 / 2e-178 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002857 [exp] 870 / 0 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10017785 [exp] 746 / 0 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10012228 [exp] 95 / 2e-22 AT5G01630 71 / 1e-10 BRCA2-like B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189600 [exp] 617 / 0 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF09103 [flax] [poplar] BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
Representative CDS sequence Show only first row Show all	>Lus10000316 pacid=23144780 polypeptide=Lus10000316 locus=Lus10000316.g ID=Lus10000316.BGIv1.0 annot-version=v1.0 ATGAATCATGGACACCGATCTGCACTCAAGAGGGTTCTTGAAGGCGATATACCTCCTTCCTCGATGATGATCCTGTGCATTTCTGCCGTTTATGCTAGTT CTGAAGCAGAGACCGAAGATTATCCCCCAGTTCTAAACAACAGGCATCAAGGTGCTTCTGCGGCGAGGATACAGCTGACCGATGGATGGTATGGAGTGGA TGCCCTTTTAGATGACCCGTTGTCTAAGCATCTTTCTACTGGAAAGCTTTTTGTTCGACAGAAACTTCGTATATGGGGTGCAGGATTGTCTGGATGGGCC AACCCGGATTCACCGCTTGAGGCATCAAAAGCTGTTAGTTTGCTGTTAAATATAAATGGAACGTATAGAGCTCATTGGGCTGATCGACTTGGTTTGTGTA AGAGAAGTGGTGCTCCTTTGGCCTTCAGTTGTATCAAGAGTAATGGAGGCTCTGTCCCTCATACGTTTCCTGCGGGTGGATCTATAGTGAGGCCAGAGAG AATGGAGACTGAGATGATACAAGTATTTAACGACAGGCGGTCGGTTGTCATAGAAGGTGTAGTTTCGGAGTTCCAAAGGGGAACCAAAACCTCACATCTT GACAAAGATAGTGATAGTGAAGAAGGTGCAAAGCTTTTCAAAATTCTGGAGACGTCAGCTGAACCAGAACTTCTAATGGCAGGGATGAGCTCAGAGCAAA TTGCTAGTTTTGTTTCTTATCAGGAAAAAGTACAGGCCACCAAACAAATGAACATGGACAAAGCAATACAGAAAGCTCTGCAAGATGCTGGCTTAGAGAA GAGAGAGGTGACCCCCTTTATGAGGGTTAGAGTGCAACTTGAGCTGGTGGAGGGGCAGGCGTATGATGTTGCAGGACTTGTACCAGTGCCCTTTGATTCA AATACCCTTTACTTGCAAGCAAGAGGATCCGCAAACAAATGGCAACCTTTGTCTCCCGTTCAGACCCAAAATTTCGAGCCATTTTTCTGTCCTCGGACAT CTATCTCGTTATCAAACTTGGGTGCACTTGCATTTGGCAGCGAATTCGATATAGCTGCAGTGGTTGTGCATGTGGGCAAGGTTTATGGAACCGGTGCATT TGCGAAACAGTGGGTGTTTGTAACTGACAGCTCCATCTCCACATTGAATTCAGAGGCTGCAAATTCCTTACTAGTCTTAAGCTTCAACGCCTCTTCCATA GACAAGGATTCAGCTACACCAGTCAACCACAATGTAGCAGGATCAATTGTTGGCTTTTGCAACATTATCAAGAGAAACAAAGATGAGAGTAACCAGTTAT GGGTAGCTGAAGCAACTGAAAACTCAACTTACTATCTTAACTTTGACTCCTCGAACTGCTCCCACCTCAGAAAGACTGCCGTCTCCGTTCAAAACTGGAC CAAGACTTCTACCTCGATTATTAGGAGACTTAAGGAAAAGGTTCTGAAAATCGTCAACGGATCTAAAAGCTAG
AA sequence Show only first row Show all	>Lus10000316 pacid=23144780 polypeptide=Lus10000316 locus=Lus10000316.g ID=Lus10000316.BGIv1.0 annot-version=v1.0 MNHGHRSALKRVLEGDIPPSSMMILCISAVYASSEAETEDYPPVLNNRHQGASAARIQLTDGWYGVDALLDDPLSKHLSTGKLFVRQKLRIWGAGLSGWA NPDSPLEASKAVSLLLNINGTYRAHWADRLGLCKRSGAPLAFSCIKSNGGSVPHTFPAGGSIVRPERMETEMIQVFNDRRSVVIEGVVSEFQRGTKTSHL DKDSDSEEGAKLFKILETSAEPELLMAGMSSEQIASFVSYQEKVQATKQMNMDKAIQKALQDAGLEKREVTPFMRVRVQLELVEGQAYDVAGLVPVPFDS NTLYLQARGSANKWQPLSPVQTQNFEPFFCPRTSISLSNLGALAFGSEFDIAAVVVHVGKVYGTGAFAKQWVFVTDSSISTLNSEAANSLLVLSFNASSI DKDSATPVNHNVAGSIVGFCNIIKRNKDESNQLWVAEATENSTYYLNFDSSNCSHLRKTAVSVQNWTKTSTSIIRRLKEKVLKIVNGSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10000316 [exp]	0	1
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10043279 [exp]	5.1	0.8405
AT5G06780		AtEML2, ACK4	EMSY-like 2, Emsy N Terminus (...		Lus10021038 [exp]	5.3	0.8233
					Lus10030985 [exp]	5.5	0.7885
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	6.9	0.8143
AT4G33100			unknown protein		Lus10014752 [exp]	8.1	0.8229
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10010000 [exp]	10.4	0.8311
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Lus10000734 [exp]	11.5	0.7845
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	12.7	0.7512
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	14.1	0.7967
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10027015 [exp]	15.2	0.8114

Compare expression of checked genes

Lus10000316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.