Plant FIBer expression Database

Lus10000317 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01630 288 / 4e-86 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1)
AT4G00020 265 / 9e-78 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002857
[exp]
757 / 0 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Lus10017785
[exp]
416 / 9e-137 AT4G00020 532 / 4e-174 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Lus10017786
[exp]
362 / 7e-123 AT4G00020 129 / 2e-33 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G189600
[exp]
389 / 5e-123 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00634 BRCA2 BRCA2 repeat
Representative CDS sequence
>Lus10000317 pacid=23144779 polypeptide=Lus10000317 locus=Lus10000317.g ID=Lus10000317.BGIv1.0 annot-version=v1.0
ATGTCGACCTGGCGGATTTTCTCCAACGCCGGTAATGATTTCCAATGGGAGACATCTGGCGGGGTGGGGCAATGCAAACCAGCAGTCGAGACGAACGCCC
ATCCGATTTCACCTGCCAGCTCCAGTCCCCGTCTTCCTTCCATGGCTGACCTCCTGCTCCAAGGCTGTTCGAAGCTTCTTGAGAACGGTAATGACAAAGA
AGGAGGTGCTCCGATGTTTCGAACTGGATCAGGAAAATCCGTCGTGCTGAAACAATCTTCGATTTCCAAAGCGTTGTTAGTTCTCGGTGATGAGGATTTC
ATCGGCTCCCGGGAAGCAACTAATAGAGGACCACCTGACTGTTTCTCCAATTCGCTTTTCCAAACTGCCTCTGGGAAATCAGTTGGTCTTTCGTCTACTT
GTCTTGTCAGAGCTAGGACTTTGTTGGGTATGGAAGAAGATGGAGACGACTCTTCTAGTTTTGATGGATTTCAATGTCCACAAAGACCATCATCTACAAA
AGAGTGGCAGAGTTTAAATCATATGGGGATGAGAGATAGTCCGACCAAGGATGTTGCAATGTCCAATTGCAGTCCTGCCTTGACTTATAAAATTGGGTTT
GCAGGAAGCAGACCAAAGAACGAGTTTACTCCAAACTCGTTGCAGTCAAAAGTTTCTGATCCAGCTGCTAAACCTCCTCCACTGAAGTTTCAGACAGCTG
GTGGTAGATCCTTATCTGTTTCTAGTGATGCATTGGAGCGTGCTAGAAGCCTTCTTGGGGATCCAGACTTGGGCAGTTTCTTCGGTGAGGGGGGTGATAA
AAGTGATCTAGTTGTCACAGCTTCTGAAGAGCGTAGTGCCAGTGAATCTTCAACCAGCAACGGCAAGGAAACGTACTCTGGATTTACCTATCCAGGAGCT
GCAAGGAGCAAATATGTGCAAAATAATTTTACATACTCACCAAAAGCATCTTCAAACCGGTTTCAATCTGCGTTCAACAAGGGAACAGTTCTGTTTGGGA
GTAACTTGATCACGCAATTTGATGCTGTTGACAATGATCGTGCTTGTGGGTCAAATCACAATGTAAATATGGGGAACAGTCTTTTGAGTAATAGGCCCTA
TATAAGTGGTCAAGCGAGAGACATTTCTTCAGGGGATAGCACTAATTCAAATACTAATCAACTTCCGAGGCCATGTCGCAGGCCGTTGGTTCATATCTCT
AACGGTATGCAGATAAATTCAGCAAATAATGGACAAGTCAGCAGCGAAAAGAGGAGACTGAGGAGTGTTTCAGTTTCTCCGTTCAAGAGGCCACGAAATT
CTAAGTTTATCACCCCTTTGAGCAAGAATTCCTGCCCCAGTGGTTTATCTGCTTTGTCATCTAAGCATACTGCTTCCAGAAGAAGGGTCTCCACCAAGTA
CCCTATTCAAACTTCAAGGATGCAAATAAAAGAATACTTCGGCGTGCCACTTCCCCACCAGAAGAAGTTGGAGGAGCAAGTAGCGGGTATTAGATCCAAC
AATGCACCTAATTATTTATTTCCTGATCATTCTGGCACAAATTGCATCGGGTTAGAAGCTCTTCGCCGCATGCTCGTTCAGTCAGGAGCTTCTGAGCAAT
GTGCTTCTGAAGAGTAA
AA sequence
>Lus10000317 pacid=23144779 polypeptide=Lus10000317 locus=Lus10000317.g ID=Lus10000317.BGIv1.0 annot-version=v1.0
MSTWRIFSNAGNDFQWETSGGVGQCKPAVETNAHPISPASSSPRLPSMADLLLQGCSKLLENGNDKEGGAPMFRTGSGKSVVLKQSSISKALLVLGDEDF
IGSREATNRGPPDCFSNSLFQTASGKSVGLSSTCLVRARTLLGMEEDGDDSSSFDGFQCPQRPSSTKEWQSLNHMGMRDSPTKDVAMSNCSPALTYKIGF
AGSRPKNEFTPNSLQSKVSDPAAKPPPLKFQTAGGRSLSVSSDALERARSLLGDPDLGSFFGEGGDKSDLVVTASEERSASESSTSNGKETYSGFTYPGA
ARSKYVQNNFTYSPKASSNRFQSAFNKGTVLFGSNLITQFDAVDNDRACGSNHNVNMGNSLLSNRPYISGQARDISSGDSTNSNTNQLPRPCRRPLVHIS
NGMQINSANNGQVSSEKRRLRSVSVSPFKRPRNSKFITPLSKNSCPSGLSALSSKHTASRRRVSTKYPIQTSRMQIKEYFGVPLPHQKKLEEQVAGIRSN
NAPNYLFPDHSGTNCIGLEALRRMLVQSGASEQCASEE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G01630 BRCA2(V), ATBRC... BRCA2-like B (.1) Lus10000317
[exp]
0 1
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Lus10028975
[exp]
3.6 0.9369
AT1G33410 NUP160, SAR1, A... ARABIDOPSIS NUCLEOPORIN 160, S... Lus10038728
[exp]
4.0 0.9313
AT1G79950 RAD3-like DNA-binding helicase... Lus10011460
[exp]
4.5 0.9119
AT5G23880 ATCPSF100, EMB1... ENHANCED SILENCING PHENOTYPE 5... Lus10021705
[exp]
6.0 0.9230
AT3G09080 Transducin/WD40 repeat-like su... Lus10017180
[exp]
6.3 0.9022
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10015971
[exp]
7.5 0.9028
AT1G05830 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithor... Lus10026725
[exp]
7.7 0.8966
AT5G06350 ARM repeat superfamily protein... Lus10029399
[exp]
15.5 0.8898
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Lus10007498
[exp]
16.7 0.9143
AT2G04235 unknown protein Lus10025175
[exp]
17.5 0.9071

Lus10000317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.